Evidence map›Paper›PMID 32956362›Full record

ArticlePLoS neglected tropical diseases2020

Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine.

Syed Faraz Ahmed, Ahmed A Quadeer, John P Barton, Matthew R McKay

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

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  15. Exploring the therapeutic potential ofSaudi journal of biological sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Syed Faraz AhmedDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0002-6086-0307
Ahmed A QuadeerDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.
John P BartonDepartment of Physics and Astronomy, University of California, Riverside, California, United States of America.ORCID 0000-0003-1467-421X
Matthew R McKayDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0002-8086-2545
Hong Kong University of Science and Technology · HKUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue virus (DENV)-associated disease is a growing threat to public health across the globe. Co-circulating as four different serotypes, DENV poses a unique challenge for vaccine design as immunity to one serotype predisposes a person to severe and potentially lethal disease upon infection from other serotypes. Recent experimental studies suggest that an effective vaccine against DENV should elicit a strong T cell response against all serotypes, which could be achieved by directing T cell responses toward cross-serotypically conserved epitopes while avoiding serotype-specific ones. Here, we used experimentally-determined DENV T cell epitopes and patient-derived DENV sequences to assess the cross-serotypic variability of the epitopes. We reveal a distinct near-binary pattern of epitope conservation across serotypes for a large number of DENV epitopes. Based on the conservation profile, we identify a set of 55 epitopes that are highly conserved in at least 3 serotypes. Most of the highly conserved epitopes lie in functionally important regions of DENV non-structural proteins. By considering the global distribution of human leukocyte antigen (HLA) alleles associated with these DENV epitopes, we identify a potentially robust subset of HLA class I and class II restricted epitopes that can serve as targets for a universal T cell-based vaccine against DENV while covering ~99% of the global population.

Indexed as

Cross ReactionsDengueDengue VaccinesDengue VirusEpitopes, T-LymphocyteHLA AntigensHumansModels, MolecularProtein Structure, TertiaryProteomeSequence Analysis, ProteinSerogroupT-LymphocytesDengue VaccinesEpitopes, T-LymphocyteHLA AntigensProteome

Identifiers

PMID32956362
PMCPMC7529213
OpenAlexW3087545186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.