Evidence map›Paper›PMID 32955191›Full record

Observational studyClinical and translational gastroenterology2020

Mucosa-Associated Microbiota in Barrett's Esophagus, Dysplasia, and Esophageal Adenocarcinoma Differ Similarly Compared With Healthy Controls.

Shajan Peter, Amanda Pendergraft, William VanDerPol, C Mel Wilcox, Kondal R Kyanam Kabir Baig, Casey Morrow, Jacques Izard, Peter J Mannon

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Clinical and translational gastroenterology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  11. Esophageal microflora in esophageal diseases.Frontiers in cellular and infection microbiology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shajan PeterDivision of Gastroenterology and Hepatology, Department of Medicine, University of Alabama at Birmingham (UAB), Birmingham, Alabama, USA.
Amanda PendergraftDepartment of Biostatistics, UAB, Birmingham, Alabama, USA.
William VanDerPolCenter for Clinical and Translational Science, University of Alabama at Birmingham, Birmingham, Alabama, USA.
C Mel WilcoxDivision of Gastroenterology and Hepatology, Department of Medicine, University of Alabama at Birmingham (UAB), Birmingham, Alabama, USA.
Kondal R Kyanam Kabir BaigDivision of Gastroenterology and Hepatology, Department of Medicine, University of Alabama at Birmingham (UAB), Birmingham, Alabama, USA.
Casey MorrowDepartment of Cell Developmental and Integrative Biology, UAB, Birmingham, Alabama, USA.
Jacques IzardNebraska Food for Health Center, University of Nebraska, Lincoln, Nebraska, USA.
Peter J MannonDivision of Gastroenterology and Hepatology, Department of Medicine, University of Alabama at Birmingham (UAB), Birmingham, Alabama, USA.
University of Alabama at Birmingham · USUniversity of Nebraska–Lincoln · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
UAB Center for Clinical and Translational Science (CCTS)UL1TR001417 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2015 to 2018
$31.4M
UAB Skin Diseases Research CenterP30AR050948 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI ELMETS, CRAIG A · 2004 to 2013
$5.5M
NCATS NIH HHS UL1 TR001417NCI NIH HHS P30 CA013148NIAMS NIH HHS P30 AR050948
6 · The paper itself

Abstract

introductionAlterations in the composition of the human gut microbiome and its metabolites have been linked to gut epithelial neoplasia. We hypothesized that differences in mucosa-adherent Barrett's microbiota could link to risk factors, providing risk of progression to neoplasia.

methodsPaired biopsies from both diseased and nonaffected esophagus (as well as gastric cardia and gastric juice for comparison) from patients with intestinal metaplasia (n = 10), low grade dysplasia (n = 10), high grade dysplasia (n = 10), esophageal adenocarcinoma (n = 12), and controls (n = 10) were processed for mucosa-associated bacteria and analyzed by 16S ribosomal ribonucleic acid V4 gene DNA sequencing. Taxa composition was tested using a generalized linear model based on the negative binomial distribution and the log link functions of the R Bioconductor package edgeR.

resultsThe microbe composition of paired samples (disease vs nondisease) comparing normal esophagus with intestinal metaplasia, low grade dysplasia, high grade dysplasia, and adenocarcinoma showed significant decreases in the phylum Planctomycetes and the archaean phylum Crenarchaeota (P < 0.05, false discovery rate corrected) in diseased tissue compared with healthy controls and intrasample controls (gastric juice and unaffected mucosa). Genera Siphonobacter, Balneola, Nitrosopumilus, and Planctomyces were significantly decreased (P < 0.05, false discovery rate corrected), representing <10% of the entire genus community. These changes were unaffected by age, tobacco use, or sex for Crenarcha. DISCUSSSION: There are similar significant changes in bacterial genera in Barrett's esophageal mucosa, dysplasia, and adenocarcinoma compared with controls and intrapatient unaffected esophagus. Further work will establish the biologic plausibility of these specific microbes' contributions to protection from or induction of esophageal epithelial dysplasia.

Indexed as

Gastrointestinal MicrobiomeAdenocarcinomaAdultAgedAged, 80 and overBarrett EsophagusBiopsyCase-Control StudiesDisease ProgressionDNA, BacterialEsophageal MucosaEsophageal NeoplasmsEsophagoscopyFemaleHealthy VolunteersHumansDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID32955191
PMCPMC7473866
OpenAlexW3047389257

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.