Evidence map›Paper›PMID 32951359›Full record

ArticleAnnals of clinical and translational neurology2020

Long-read whole-genome sequencing for the genetic diagnosis of dystrophinopathies.

Zhiying Xie, Chengyue Sun, Siwen Zhang, Yilin Liu, Meng Yu, Yiming Zheng, Lingchao Meng, Anushree Acharya, Diana M Cornejo-Sanchez, Gao Wang and 5 more

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical and translational neurology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Whole-Genome Sequencing Identified New Structural Variations in theInternational journal of molecular sciences · 2023
    Article
  8. Review
  9. Article
  10. Long-read sequencing improves diagnostic rate in neuromuscular disorders.Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology · 2023
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Zhiying XieDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.ORCID 0000-0003-2102-6026
Chengyue SunDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Siwen ZhangGrandOmics Biosciences, Beijing, China.
Yilin LiuDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Meng YuDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.ORCID 0000-0003-0234-5902
Yiming ZhengDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Lingchao MengDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Anushree AcharyaCenter for Statistical Genetics, Sergievsky Center, Taub Institute for Alzheimer's Disease and the Aging Brain, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Diana M Cornejo-SanchezCenter for Statistical Genetics, Sergievsky Center, Taub Institute for Alzheimer's Disease and the Aging Brain, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Gao WangCenter for Statistical Genetics, Sergievsky Center, Taub Institute for Alzheimer's Disease and the Aging Brain, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Wei ZhangDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Isabelle SchrauwenCenter for Statistical Genetics, Sergievsky Center, Taub Institute for Alzheimer's Disease and the Aging Brain, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Suzanne M LealCenter for Statistical Genetics, Sergievsky Center, Taub Institute for Alzheimer's Disease and the Aging Brain, and the Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Zhaoxia WangDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Yun YuanDepartment of Neurology, Peking University First Hospital, Beijing, 100034, China.
Peking University · CNColumbia University Irving Medical Center · USGrandomics (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The precise genetic diagnosis of dystrophinopathies can be challenging, largely due to rare deep intronic variants and more complex structural variants (SVs). We report on the genetic characterization of a dystrophinopathy patient. He remained without a genetic diagnosis after routine genetic testing, dystrophin protein and mRNA analysis, and short- and long-read whole DMD gene sequencing. We finally identified a novel complex SV in DMD via long-read whole-genome sequencing. The variant consists of a large-scale (~1Mb) inversion/deletion-insertion rearrangement mediated by LINE-1s. Our study shows that long-read whole-genome sequencing can serve as a clinical diagnostic tool for genetically unsolved dystrophinopathies.

Indexed as

DystrophinGenome, HumanHumansMaleMuscular Dystrophy, DuchenneMutationRNA, MessengerWhole Genome SequencingDystrophinRNA, Messenger

Identifiers

PMID32951359
PMCPMC7545597
OpenAlexW3087300939

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.