Evidence map›Paper›PMID 32949024›Full record

ArticleProtein science : a publication of the Protein Society2020

Solution NMR structure of Se0862, a highly conserved cyanobacterial protein involved in biofilm formation.

Ning Zhang, Yong-Gang Chang, Roger Tseng, Sergey Ovchinnikov, Rakefet Schwarz, Andy LiWang

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Profiling the interplay and coevolution ofMicrobiology spectrum · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Ning ZhangDepartment of Chemistry and Chemical Biology, University of California, Merced, California, USA.ORCID 0000-0002-3590-3774
Yong-Gang ChangDepartment of Chemistry and Chemical Biology, University of California, Merced, California, USA.
Roger TsengDepartment of Chemistry and Chemical Biology, University of California, Merced, California, USA.
Sergey OvchinnikovHarvard University, Cambridge, Massachusetts, USA.
Rakefet SchwarzThe Mina and Everard Goodman Faculty of Life Sciences, Bar-Ilan University, Ramat-Gan, Israel.
Andy LiWangDepartment of Chemistry and Chemical Biology, University of California, Merced, California, USA.ORCID 0000-0003-4741-6946
University of California, Merced · USBar-Ilan University · ILHarvard University Press · USUnited States Department of Agriculture · US

Funding

ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
NIGMS NIH HHS R01 GM129325
6 · The paper itself

Abstract

Biofilms are accumulations of microorganisms embedded in extracellular matrices that protect against external factors and stressful environments. Cyanobacterial biofilms are ubiquitous and have potential for treatment of wastewater and sustainable production of biofuels. But the underlying mechanisms regulating cyanobacterial biofilm formation are unclear. Here, we report the solution NMR structure of a protein, Se0862, conserved across diverse cyanobacterial species and involved in regulation of biofilm formation in the cyanobacterium Synechococcus elongatus PCC 7942. Se0862 is a class α+β protein with ααββββαα topology and roll architecture, consisting of a four-stranded β-sheet that is flanked by four α-helices on one side. Conserved surface residues constitute a hydrophobic pocket and charged regions that are likely also present in Se0862 orthologs.

Indexed as

BiofilmsSynechococcusBacterial ProteinsNuclear Magnetic Resonance, BiomolecularProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandBacterial ProteinsbiofilmcyanobacteriaNMR spectroscopyprotein structureS. elongatus PCC 7942

Identifiers

PMID32949024
PMCPMC7586914
OpenAlexW3087164449

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.