Evidence map›Paper›PMID 32948754›Full record

ArticleNature communications2020

Multiplex flow magnetic tweezers reveal rare enzymatic events with single molecule precision.

Rohit Agarwal, Karl E Duderstadt

Abstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Thermo-optical tweezers based on photothermal waveguides.Microsystems & nanoengineering · 2024
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Manipulation and Mechanical Deformation of Leukemia Cells by High-Frequency Ultrasound Single Beam.IEEE transactions on ultrasonics, ferroelectrics, and frequency control · 2022
    Article
  15. Article
  16. DNA topoisomerases: Advances in understanding of cellular roles and multi-protein complexes via structure-function analysis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2021
    Review
  17. Article
  18. DNA replication machinery: Insights fromComputational and structural biotechnology journal · 2021
    Review
  19. DNA replication:Computational and structural biotechnology journal · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Rohit AgarwalStructure and Dynamics of Molecular Machines, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0001-9738-6939
Karl E DuderstadtStructure and Dynamics of Molecular Machines, Max Planck Institute of Biochemistry, Martinsried, Germany. duderstadt@biochem.mpg.de.ORCID http://orcid.org/0000-0002-1279-7841

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The application of forces and torques on the single molecule level has transformed our understanding of the dynamic properties of biomolecules, but rare intermediates have remained difficult to characterize due to limited throughput. Here, we describe a method that provides a 100-fold improvement in the throughput of force spectroscopy measurements with topological control, which enables routine imaging of 50,000 single molecules and a 100 million reaction cycles in parallel. This improvement enables detection of rare events in the life cycle of the cell. As a demonstration, we characterize the supercoiling dynamics and drug-induced DNA break intermediates of topoisomerases. To rapidly quantify distinct classes of dynamic behaviors and rare events, we developed a software platform with an automated feature classification pipeline. The method and software can be readily adapted for studies of a broad range of complex, multistep enzymatic pathways in which rare intermediates have escaped classification due to limited throughput.

Indexed as

Magnetic PhenomenaNanotechnologyCiprofloxacinDNADNA BreaksMagneticsNucleic Acid ConformationOptical TweezersPhysical PhenomenaSoftwareSpectrum AnalysisCiprofloxacinDNA

Identifiers

PMID32948754
PMCPMC7501243

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.