Evidence map›Paper›PMID 32948672›Full record

ArticleScience immunology2020

Transcriptomic and clonal characterization of T cells in the human central nervous system.

Jenna L Pappalardo, Le Zhang, Maggie K Pecsok, Kelly Perlman, Chrysoula Zografou, Khadir Raddassi, Ahmad Abulaban, Smita Krishnaswamy, Jack Antel, David van Dijk and 1 more

Open access · greenAbstract read
In one paragraph

Article in Science immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 137 citations in OpenAlex.

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  11. Immune cell profiling reveals expanded stem cell-like memory T cells in anti-GAD65-associated neurological syndromes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  12. Optimizing C14120-based LNPs forMolecular therapy. Nucleic acids · 2026
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Jenna L PappalardoDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0002-5542-3356
Le ZhangDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0002-4860-831X
Maggie K PecsokDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0001-6806-5423
Kelly PerlmanMontreal Neurologic Institute, Montreal, Quebec, Canada.ORCID 0000-0002-2716-0712
Chrysoula ZografouDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0002-2934-2739
Khadir RaddassiDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0002-2383-9744
Ahmad AbulabanDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0002-2508-9852
Smita KrishnaswamyDepartments of Genetics and Computer Science, Yale School of Medicine, New Haven, CT 06511, USA.ORCID 0000-0001-5823-1985
Jack AntelMontreal Neurologic Institute, Montreal, Quebec, Canada.ORCID 0000-0002-5148-0636
David van DijkDepartments of Internal Medicine (Cardiology), Cardiovascular Research Center, and Computer Science, New Haven, CT 06511, USA. david.vandijk@yale.edu david.hafler@yale.edu.ORCID 0000-0003-3911-9925
David A HaflerDepartments of Neurology and Immunobiology, Yale School of Medicine, New Haven, CT 06511, USA. david.vandijk@yale.edu david.hafler@yale.edu.ORCID 0000-0003-4664-535X
Yale University · USMontreal Neurological Institute and Hospital · CABroad Institute · USCardiovascular Research Center · BR

Funding

Role of Negative Costimulation in Regulation of AutoimmunityP01AI039671 · NIAID · YALE UNIVERSITY · PI David A. Hafler · 1996 to 2026
$51.7M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI RUTH HALABAN · 2006 to 2026
$43.9M
TCR recognition of MHC class II peptide compexes in multiple sclerosisP01AI045757 · NIAID · DANA-FARBER CANCER INSTITUTE · PI KUCHROO, VIJAY K., LOVE, JOHN CHRISTOPHER · 1999 to 2017
$22.8M
Transgenic / Knock-out mouse coreP01AI073748 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI BEHAR, SAMUEL M · 2008 to 2019
$17.1M
A Catalog of Cell Types and Genomic Elements in Tissues, Organoids and DiseaseUM1HG009390 · NHGRI · BROAD INSTITUTE, INC. · PI BERNSTEIN, BRADLEY EVAN · 2017 to 2021
$11.0M
(8) Mechanisms of autoimmune endocrine diseases in patients receiving checkpoint inhibitorsR01CA227473 · NCI · YALE UNIVERSITY · PI HEROLD, KEVAN C, KLUGER, HARRIET M. · 2018 to 2022
$3.2M
Yale Clinical Neuroscientist Training ProgramR25NS079193 · NINDS · YALE UNIVERSITY · PI HAFLER, DAVID A. · 2012 to 2023
$943k
NCI NIH HHS P50 CA121974NCI NIH HHS R01 CA227473NHGRI NIH HHS UM1 HG009390NIAID NIH HHS P01 AI039671NIAID NIH HHS P01 AI045757NIAID NIH HHS P01 AI073748NIAID NIH HHS U19 AI089992NINDS NIH HHS R25 NS079193
6 · The paper itself

Abstract

T cells provide critical immune surveillance to the central nervous system (CNS), and the cerebrospinal fluid (CSF) is thought to be a main route for their entry. Further characterization of the state of T cells in the CSF in healthy individuals is important for understanding how T cells provide protective immune surveillance without damaging the delicate environment of the CNS and providing tissue-specific context for understanding immune dysfunction in neuroinflammatory disease. Here, we have profiled T cells in the CSF of healthy human donors and have identified signatures related to cytotoxic capacity and tissue adaptation that are further exemplified in clonally expanded CSF T cells. By comparing profiles of clonally expanded T cells obtained from the CSF of patients with multiple sclerosis (MS) and healthy donors, we report that clonally expanded T cells from the CSF of patients with MS have heightened expression of genes related to T cell activation and cytotoxicity.

Indexed as

TranscriptomeAdultCentral Nervous SystemHumansMultiple Sclerosis, Relapsing-RemittingT-Lymphocytes

Identifiers

PMID32948672
PMCPMC8567322
OpenAlexW3087245118

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.