Evidence map›Paper›PMID 32948633›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2020

Methylated DNA Markers of Esophageal Squamous Cancer and Dysplasia: An International Study.

Yi Qin, William Taylor, William R Bamlet, Adharsh Ravindran, Alessia Buglioni, Xiaoming Cao, Patrick H Foote, Seth W Slettedahl, Douglas W Mahoney, Paul S Albert and 14 more

Open access · greenAbstract read
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Review
  3. Improving esophageal cancer screening across the globe: Translating knowledge into action.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2024
    Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 2 countries.

Yi QinDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-3326-1640
William TaylorDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
William R BamletDepartment of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-2903-1284
Adharsh RavindranDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Alessia BuglioniDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Xiaoming CaoDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Patrick H FooteDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
Seth W SlettedahlDepartment of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-3398-3608
Douglas W MahoneyDepartment of Biomedical Statistics and Informatics, Mayo Clinic, Rochester, Minnesota.
Paul S AlbertBiostatistics Branch, NCI, Rockville, Maryland.
Sungduk KimBiostatistics Branch, NCI, Rockville, Maryland.
Nan HuMetabolic Epidemiology Branch, NCI, Rockville, Maryland.
Philip R TaylorMetabolic Epidemiology Branch, NCI, Rockville, Maryland.
Arash EtemadiMetabolic Epidemiology Branch, NCI, Rockville, Maryland.
Masoud SotoudehDigestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Sciences, Tehran, Iran.
Reza MalekzadehDigestive Oncology Research Center, Digestive Disease Research Institute, Tehran University of Medical Sciences, Tehran, Iran.ORCID 0000-0002-9820-6335
Christian C AbnetMetabolic Epidemiology Branch, NCI, Rockville, Maryland.ORCID 0000-0002-3008-7843
Thomas C SmyrkDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
David KatzkaDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-2307-2317
Mark D TopazianDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-1090-2844
Sanford M DawseyMetabolic Epidemiology Branch, NCI, Rockville, Maryland.ORCID 0000-0003-2185-0533
David AhlquistDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.
John B KisielDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-3840-5324
Prasad G IyerDepartment of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota. iyer.prasad@mayo.edu.
Mayo Clinic · USInternational Epidemiology Institute · USNational Coalition for Cancer Survivorship · USTehran University of Medical Sciences · IR

Funding

Minimally Invasive Molecular Approaches for the Detection of Barrett’s Esophagus and Esophageal AdenocarcinomaR01CA241164 · NCI · MAYO CLINIC ROCHESTER · PI Jagpreet Chhatwal, Prasad G. Iyer · 2019 to 2026
$3.9M
Multi-site Gastrointestinal Cancer Detection by Stool DNA MethylationR37CA214679 · NCI · MAYO CLINIC ROCHESTER · PI KISIEL, JOHN · 2018 to 2024
$2.8M
NCI NIH HHS R01 CA241164NCI NIH HHS R37 CA214679
6 · The paper itself

Abstract

backgroundDiscovery of methylated DNA markers (MDM) of esophageal squamous cell carcinoma (ESCC) has sparked interest in assessing these markers in tissue. We evaluated MDMs in ESCC from three geographically and ethnically distinct populations, and explored the feasibility of assaying MDMs from DNA obtained by swallowed balloon devices.

methodsMDMs were assayed in ESCC and normal tissues obtained from the populations of United States, Iran, and China, and from exfoliative cytology specimens obtained by balloons in a Chinese population. Areas under the receiver operating curve (AUC) of MDMs discriminating ESCC from normal tissues were calculated. Random forest prediction models were built, trained on U.S. cases and controls, and calibrated to U.S.-only controls (model 1) and three-country controls (model 2). Statistical tests were used to assess the relationship between dysplasia and MDM levels in balloons.

resultsExtracted DNA from 333 ESCC and 322 normal tissues was analyzed, in addition to archival DNA from 98 balloons. For ESCC, model 1 validated in Iranian and Chinese tissues with AUCs of 0.90 and 0.87, and model 2 yielded AUCs of 0.99, 0.96, and 0.94 in tissues from the United States, Iran, and China, respectively. In Chinese balloons, MDMs showed a statistically significant trend of increasing levels with increasing grades of dysplasia (

conclusionsMDMs accurately discriminate ESCC from normal esophagus in tissues obtained from high- and low-incidence countries. Preliminary data suggest that levels of MDMs assayed in DNA from swallowed balloon devices increase with dysplasia grade. Larger studies are needed to validate these results. IMPACT: MDMs coupled with minimally invasive collection methods have the potential for worldwide application in ESCC screening.

Indexed as

AdultAgedDNA MethylationEsophageal Squamous Cell CarcinomaFemaleHumansMaleMiddle AgedRetrospective StudiesSurvival Analysis

Identifiers

PMID32948633
PMCPMC7710574
OpenAlexW3087018766

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.