Evidence map›Paper›PMID 32946783›Full record

ArticleCell2020

Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution.

Cameron S Cowan, Magdalena Renner, Martina De Gennaro, Brigitte Gross-Scherf, David Goldblum, Yanyan Hou, Martin Munz, Tiago M Rodrigues, Jacek Krol, Tamas Szikra and 24 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 389 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
389citing papers in PubMed, 1 pooled it
29.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

389 citing papers in PubMed, 1 synthesis or guideline pooled it, 640 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Approaching a connectome of the human foveal retina.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. 3D epigenomic landscape of the human retinal pigment epithelium.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  20. Article

329 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 9 institutions in 3 countries.

Cameron S CowanInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Magdalena RennerInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; Novartis Institutes for Biomedical Research, 4056 Basel, Switzerland.
Martina De GennaroInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Brigitte Gross-ScherfInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
David GoldblumDepartment of Ophthalmology, University of Basel, 4031 Basel, Switzerland.
Yanyan HouInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Martin MunzInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Tiago M RodriguesInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Jacek KrolInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Tamas SzikraInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Rachel CuttatNovartis Institutes for Biomedical Research, 4056 Basel, Switzerland.
Annick WaldtNovartis Institutes for Biomedical Research, 4056 Basel, Switzerland.
Panagiotis PapasaikasFriedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; Swiss Institute of Bioinformatics, 4058 Basel, Switzerland.
Roland DiggelmannBio Engineering Laboratory, Department of Biosystems Science and Engineering of ETH Zurich, 4058 Basel, Switzerland.
Claudia P Patino-AlvarezInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Patricia GallikerInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Stefan E SpirigInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Dinko PavlinicInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Nadine Gerber-HollbachDepartment of Ophthalmology, University of Basel, 4031 Basel, Switzerland.
Sven SchuiererNovartis Institutes for Biomedical Research, 4056 Basel, Switzerland.
Aldin SrdanovicFriedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland.
Marton BaloghInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Riccardo PaneroInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Akos KusnyerikInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Department of Ophthalmology, Semmelweis University, 1085 Budapest, Hungary.
Arnold SzaboDepartment of Anatomy, Histology and Embryology, Semmelweis University, 1085 Budapest, Hungary.
Michael B StadlerFriedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; Swiss Institute of Bioinformatics, 4058 Basel, Switzerland.
Selim OrgülDepartment of Ophthalmology, University of Basel, 4031 Basel, Switzerland.
Simone PicelliInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland.
Pascal W HaslerDepartment of Ophthalmology, University of Basel, 4031 Basel, Switzerland.
Andreas HierlemannBio Engineering Laboratory, Department of Biosystems Science and Engineering of ETH Zurich, 4058 Basel, Switzerland.
Hendrik P N SchollInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Department of Ophthalmology, University of Basel, 4031 Basel, Switzerland; Wilmer Eye Institute, Johns Hopkins University, Baltimore, MD 21287, USA.
Guglielmo RomaNovartis Institutes for Biomedical Research, 4056 Basel, Switzerland. Electronic address: guglielmo.roma@novartis.com.
Florian NigschNovartis Institutes for Biomedical Research, 4056 Basel, Switzerland. Electronic address: florian.nigsch@novartis.com.
Botond RoskaInstitute of Molecular and Clinical Ophthalmology Basel, 4031 Basel, Switzerland; Friedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland; Department of Ophthalmology, University of Basel, 4031 Basel, Switzerland. Electronic address: botond.roska@iob.ch.
Institute of Molecular and Clinical Ophthalmology Basel · CHFriedrich Miescher Institute · CHNovartis (Switzerland) · CHUniversity of Basel · CHETH Zurich · CHSemmelweis University · HUSIB Swiss Institute of Bioinformatics · CHFriedrich Miescher Institute · CHJohns Hopkins University · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

Human organoids recapitulating the cell-type diversity and function of their target organ are valuable for basic and translational research. We developed light-sensitive human retinal organoids with multiple nuclear and synaptic layers and functional synapses. We sequenced the RNA of 285,441 single cells from these organoids at seven developmental time points and from the periphery, fovea, pigment epithelium and choroid of light-responsive adult human retinas, and performed histochemistry. Cell types in organoids matured in vitro to a stable "developed" state at a rate similar to human retina development in vivo. Transcriptomes of organoid cell types converged toward the transcriptomes of adult peripheral retinal cell types. Expression of disease-associated genes was cell-type-specific in adult retina, and cell-type specificity was retained in organoids. We implicate unexpected cell types in diseases such as macular degeneration. This resource identifies cellular targets for studying disease mechanisms in organoids and for targeted repair in human retinas.

Indexed as

Cell Culture TechniquesCell DifferentiationCell LineElectrophysiologyFemaleGene Expression Regulation, DevelopmentalGenetic Predisposition to DiseaseHumansInduced Pluripotent Stem CellsIn Situ HybridizationMicroscopy, ElectronMultigene FamilyNaphthoquinonesOrganoidsRetinaSingle-Cell AnalysishistochromeNaphthoquinoneseye diseasehuman retinamacular degenerationorganoidorganoid developmentretinaretinal organoidsingle cell sequencingsynaptic functiontranscriptome

Identifiers

PMID32946783
PMCPMC7505495
OpenAlexW3087102910

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.