ArticlePlant biotechnology journal2021
Genomic analyses of diverse wild and cultivated accessions provide insights into the evolutionary history of jujube.
Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed, 91 citations in OpenAlex.
- Research Progress and Prospects of Molecular Marker Technology on Jujube Trees.Plants (Basel, Switzerland) · 2026Review
- Phytoplasma Effector SJP8 Suppresses Host Immunity by Promoting the Degradation of ZjMYB15 and ZjMYB86-like to Perturb Jasmonic Acid and Hydrogen Peroxide Homeostasis in Jujube.Molecular plant pathology · 2026Article
- Integrated Metabolomics and Network Pharmacology Reveal the Active Components and Potential Health-Beneficial Mechanisms of Different Jujube (Foods (Basel, Switzerland) · 2026Article
- An integrated analysis of metabolomics and transcriptomics offers profound insights into the mechanisms of metabolic differentiation between Semen Ziziphi Spinosae and Semen Jujubae.BMC plant biology · 2026Article
- Genome-wide association study bridging genomics-phenomics gap in natural plant populations.Journal of applied genetics · 2026Review
- Insights into double sigmoid pattern during Chinese cherry fruit development through comparative physiological and transcriptomic profiles.BMC plant biology · 2025Article
- Genome-wide locus-allele comparison reveals differential evolution dynamics from annual wild to landrace and released cultivar soybeans.The plant genome · 2025Article
- Infection with Jujube Witches' Broom Phytoplasma Alters the Expression Pattern of theMicroorganisms · 2025Article
- Assessment of Fruit Traits and Antioxidant Capacity in Wild and Cultivated Genotypes ofPlants (Basel, Switzerland) · 2025Article
- Bioactive Compounds and Antimicrobial Activities in IranianFood science & nutrition · 2025Article
- Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication.Nature communications · 2024Article
- Transcriptome-referenced association study provides insights into the regulation of oil and fatty acid biosynthesis in Torreya grandis kernel.Journal of advanced research · 2024Article
- Haplotype-resolved T2T reference genomes for wild and domesticated accessions shed new insights into the domestication of jujube.Horticulture research · 2024Article
- A natural mutation in the promoter of the aconitase geneHorticulture research · 2024Article
- Cultivation and morphology of jujube (Ziziphus Jujuba Mill.) in the Qi River Basin of Northern China during the Neolithic Period.Scientific reports · 2024Article
- Comparative analysis of jujube and sour jujube gave insight into their difference in genetic diversity and suitable habitat.Frontiers in genetics · 2024Article
- Quantification of fatty acids in seed oil and important bioactive compounds in Iranian Rosa canina L. ecotypes for potential cosmetic and medicinal uses.Scientific reports · 2023Article
- Transcriptome Characterization of Pigment-Related Genes in Jujube (Ziziphus Jujuba Mill.) Peel at Different Growth Stages.Biochemical genetics · 2023Article
- 'Insects · 2023Article
- Jujube witches' broom phytoplasmas inhibit ZjBRC1-mediated abscisic acid metabolism to induce shoot proliferation.Horticulture research · 2023Article
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Authors and funding
24 authors at 4 institutions in 1 country.
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Abstract
The Chinese jujube (Ziziphus jujuba Mill.), a member of the Rhamnaceae family, is an important perennial fruit tree crop of substantial economic, ecological and nutritional value, and is also used as a traditional herbal medicine. Here, we report the resequencing of 493 jujube accessions, including 202 wild and 291 cultivated accessions at >16× depth. Our population genomic analyses revealed that the Shanxi-Shaanxi area of China was jujube's primary domestication centre and that jujube was then disseminated into East China before finally extending into South China. Divergence events analysis indicated that Ziziphus acidojujuba and Ziziphus jujuba diverged around 2.7 Mya, suggesting the interesting possibility that a long pre-domestication period may have occurred prior to human intervention. Using the large genetic polymorphism data set, we identified a 15-bp tandem insertion in the promoter of the jujube ortholog of the POLLEN DEFECTIVE IN GUIDANCE 1 (POD1) gene, which was strongly associated with seed-setting rate. Integrating genome-wide association study (GWAS), transcriptome data, expression analysis and transgenic validation in tomato, we identified a DA3/UBIQUITIN-SPECIFIC PROTEASE 14 (UBP14) ortholog, which negatively regulate fruit weight in jujube. We also identified candidate genes, which have likely influenced the selection of fruit sweetness and crispness texture traits among fresh and dry jujubes. Our study not only illuminates the genetic basis of jujube evolution and domestication and provides a deep and rich genomic resource to facilitate both crop improvement and hypothesis-driven basic research, but also identifies multiple agriculturally important genes for this unique perennial tree fruit species.
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