Evidence map›Paper›PMID 32945560›Full record

ArticleThe New phytologist2021

Endogenous activated small interfering RNAs in virus-infected Brassicaceae crops show a common host gene-silencing pattern affecting photosynthesis and stress response.

Paola Leonetti, Aysan Ghasemzadeh, Arianna Consiglio, Torsten Gursinsky, Sven-Erik Behrens, Vitantonio Pantaleo

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Small RNA mobility and plant virus diseases.Journal of experimental botany · 2026
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  12. The master role of siRNAs in plant immunity.Molecular plant pathology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Paola LeonettiDepartment of Biology, Agricultural and Food Sciences, Institute for Sustainable Plant Protection, Bari Unit, CNR, Bari, 70126, Italy.ORCID 0000-0003-2636-3419
Aysan GhasemzadehDepartment of Biology, Agricultural and Food Sciences, Institute for Sustainable Plant Protection, Bari Unit, CNR, Bari, 70126, Italy.ORCID 0000-0001-6596-7026
Arianna ConsiglioDepartment of Biomedical Sciences, Institute for Biomedical Technologies, Bari Unit, CNR, Bari, 70126, Italy.ORCID 0000-0003-3768-6352
Torsten GursinskyInstitute of Biochemistry and Biotechnology (NFI), Section Microbial Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale, D-06120, Germany.ORCID 0000-0003-0532-4701
Sven-Erik BehrensInstitute of Biochemistry and Biotechnology (NFI), Section Microbial Biotechnology, Martin Luther University Halle-Wittenberg, Halle/Saale, D-06120, Germany.ORCID 0000-0002-7317-1770
Vitantonio PantaleoDepartment of Biology, Agricultural and Food Sciences, Institute for Sustainable Plant Protection, Bari Unit, CNR, Bari, 70126, Italy.ORCID 0000-0001-6677-6504
Institute for Sustainable Plant Protection · ITMartin Luther University Halle-Wittenberg · DETarbiat Modares University · IRUniversity of Bari Aldo Moro · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viral infections are accompanied by a massive production of small interfering RNAs (siRNAs) of plant origin, such as virus-activated (va)siRNAs, which drive the widespread silencing of host gene expression, and whose effects in plant pathogen interactions remain unknown. By combining phenotyping and molecular analyses, we characterized vasiRNAs that are associated with typical mosaic symptoms of cauliflower mosaic virus infection in two crops, turnip (Brassica rapa) and oilseed rape (Brassica napus), and the reference plant Arabidopsis thaliana. We identified 15 loci in the three infected plant species, whose transcripts originate vasiRNAs. These loci appear to be generally affected by virus infections in Brassicaceae and encode factors that are centrally involved in photosynthesis and stress response, such as Rubisco activase (RCA), senescence-associated protein, heat shock protein HSP70, light harvesting complex, and membrane-related protein CP5. During infection, the expression of these factors is significantly downregulated, suggesting that their silencing is a central component of the plant's response to virus infections. Further findings indicate an important role for 22 nt long vasiRNAs in the plant's endogenous RNA silencing response. Our study considerably enhances knowledge about the new class of vasiRNAs that are triggered in virus-infected plants and will help to advance strategies for the engineering of gene clusters involved in the development of crop diseases.

Indexed as

ArabidopsisPlant VirusesGene Expression Regulation, PlantPhotosynthesisPlant DiseasesRNA, Small InterferingRNA, Small Interfering22-nt sRNAsCaMVdisease phenotypeoilseed rapephotosynthetic-related genesplant defenseturnip

Identifiers

PMID32945560
PMCPMC7821159
OpenAlexW3087348477

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.