Evidence map›Paper›PMID 32943334›Full record

ArticleJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society2021

Sputum versus nasopharyngeal samples for the molecular diagnosis of respiratory viral infection in cystic fibrosis: A pilot study.

Emilie Cardot-Martin, Hélène Le Guillou-Guillemette, Rozenn Le Berre, Sophie Ramel, Jean Le Bihan, Dominique Grenet, Eric Farfour, Françoise Troussier, Thierry Urban, Lisa Billard and 6 more

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 5 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Emilie Cardot-MartinService de Biologie Clinique, Hôpital Foch, 92151 Suresnes, France. Electronic address: e.cardot@hopital-foch.org.
Hélène Le Guillou-GuillemetteLaboratoire de Virologie, Centre Hospitalier Universitaire et Laboratoire HIFI, UPRES, EA 3859, Angers, France. Electronic address: HeLeguillou@chu-angers.fr.
Rozenn Le BerreUniv Brest, Inserm, EFS, UMR 1078, GGB Génétique, Génomique Fonctionnelle et Biotechnologies, F-29200 Brest, France; Département de Médecine Interne et Pneumologie, Centre Hospitalier Régional et Universitaire de Brest, France. Electronic address: rozenn.leberre@chu-brest.fr.
Sophie RamelCentre de Ressources et de Compétences de la Mucoviscidose, Presqu'île de Perharidy, Ildys, 29648 Roscoff, France. Electronic address: sophie.ramel@ildys.org.
Jean Le BihanCentre de Ressources et de Compétences de la Mucoviscidose, Presqu'île de Perharidy, Ildys, 29648 Roscoff, France. Electronic address: jean.lebihan@ildys.org.
Dominique GrenetService de pneumologie, hôpital Foch, 92151 Suresnes, France. Electronic address: d.grenet@hopital-foch.org.
Eric FarfourService de Biologie Clinique, Hôpital Foch, 92151 Suresnes, France. Electronic address: e.farfour@hopital-foch.org.
Françoise TroussierPôle femme mère, enfant, centre Robert Debré, CHU d'Angers, 4 rue Larrey, 49993 Angers cedex 09, France. Electronic address: FrTroussier@chu-angers.fr.
Thierry UrbanDépartement de Pneumologie, CHU d'Angers, 4 rue Larrey, 49933 Angers Cedex 1, France. Electronic address: thurban@chu-angers.fr.
Lisa BillardUniv Brest, Inserm, EFS, UMR 1078, GGB Génétique, Génomique Fonctionnelle et Biotechnologies, F-29200 Brest, France.
Léa PilorgéUnité de Virologie, Département de Bactériologie-Virologie-Parasitologie-Mycologie-Hygiène, Pôle de Biologie-Pathologie, Centre Hospitalier Régional et Universitaire, 29609 Brest cedex, France.
Adissa Minoui-TranUnité de Virologie, Département de Bactériologie-Virologie-Parasitologie-Mycologie-Hygiène, Pôle de Biologie-Pathologie, Centre Hospitalier Régional et Universitaire, 29609 Brest cedex, France.
Christopher PayanUniv Brest, Inserm, EFS, UMR 1078, GGB Génétique, Génomique Fonctionnelle et Biotechnologies, F-29200 Brest, France; Unité de Virologie, Département de Bactériologie-Virologie-Parasitologie-Mycologie-Hygiène, Pôle de Biologie-Pathologie, Centre Hospitalier Régional et Universitaire, 29609 Brest cedex, France.
Marie-Reine MunckService de Pédiatrie générale, Centre Hospitalier Régional Universitaire, 29609 Brest cedex, France. Electronic address: marie-reine.munck@chu-brest.fr.
Geneviève Héry-ArnaudUniv Brest, Inserm, EFS, UMR 1078, GGB Génétique, Génomique Fonctionnelle et Biotechnologies, F-29200 Brest, France; Unité de Bactériologie, Département de Bactériologie-Virologie-Hygiène-Parasitologie-Mycologie, Pôle de Biologie-Pathologie, Centre Hospitalier Régional Universitaire, 29609 Brest cedex, France. Electronic address: Genevieve.Hery-Arnaud@univ-brest.fr.
Sophie ValletUniv Brest, Inserm, EFS, UMR 1078, GGB Génétique, Génomique Fonctionnelle et Biotechnologies, F-29200 Brest, France; Unité de Virologie, Département de Bactériologie-Virologie-Parasitologie-Mycologie-Hygiène, Pôle de Biologie-Pathologie, Centre Hospitalier Régional et Universitaire, 29609 Brest cedex, France. Electronic address: sophie.vallet@chu-brest.fr.
Inserm · FRCentre Hospitalier Régional Universitaire de Brest · FRCentre Hospitalier Universitaire d'Angers · FRHôpital Foch · FRVaincre la Mucoviscidose · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses are important agents in lung function deterioration in Cystic Fibrosis (CF). To date, no standard operating procedures (SOPs) have been established to determine which sampling method is the most effective for an optimal virological diagnosis of respiratory viral infections in CF. Here we investigated the performances of two sampling sites, sputum samples versus nasopharyngeal (NP) swabs, for thirty participants from three CF centres presenting an acute respiratory infection. Sputum and NP samples were simultaneously collected and multiplex PCR targeting 16 to 18 viruses were performed. Viruses were detected for 18/30 patients (60%). A high concordance between the sputum and NP samples was observed in 25 (83%) paired samples of which 13 tested positive and 12 tested negative. These results highlighted the relevance of sputum sampling for diagnostic of respiratory viruses in CF, which is less invasive and better accepted by CF patients than NP, and allows accurate bacterial detection.

Indexed as

AdolescentAdultChildChild, PreschoolCystic FibrosisFeasibility StudiesFemaleHumansInfantMaleMiddle AgedNasopharynxRespiratory Tract InfectionsRetrospective StudiesSputumCystic fibrosisInfluenza virusMultiplex molecular diagnosisnasopharyngealRespiratory virusSputum

Identifiers

PMID32943334
PMCPMC7489228
OpenAlexW3084472703

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.