Evidence map›Paper›PMID 32942778›Full record

ArticleInternational journal of molecular sciences2020

Dissecting the Effect of a 3D Microscaffold on the Transcriptome of Neural Stem Cells with Computational Approaches: A Focus on Mechanotransduction.

Federica Rey, Cecilia Pandini, Bianca Barzaghini, Letizia Messa, Toniella Giallongo, Orietta Pansarasa, Stella Gagliardi, Matteo Brilli, Gian Vincenzo Zuccotti, Cristina Cereda and 2 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Mechanobiology in Cells and Tissues.International journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Federica ReyDepartment of Biomedical and Clinical Sciences "L. Sacco", University of Milan, Via Grassi 74, 20157 Milan, Italy.ORCID 0000-0001-7944-3143
Cecilia PandiniGenomic and Post-Genomic Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Bianca BarzaghiniDepartment of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, 20133 Milano, Italy.
Letizia MessaDepartment of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, 20133 Milano, Italy.
Toniella GiallongoDepartment of Biomedical and Clinical Sciences "L. Sacco", University of Milan, Via Grassi 74, 20157 Milan, Italy.
Orietta PansarasaGenomic and Post-Genomic Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0002-3041-0612
Stella GagliardiGenomic and Post-Genomic Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0002-6589-6907
Matteo BrilliPediatric Research Center "Romeo ed Enrica Invernizzi", University of Milano, Via G.B. Grassi 74, 20157 Milano, Italy.ORCID 0000-0001-9891-4617
Gian Vincenzo ZuccottiDepartment of Biomedical and Clinical Sciences "L. Sacco", University of Milan, Via Grassi 74, 20157 Milan, Italy.ORCID 0000-0002-2795-9874
Cristina CeredaGenomic and Post-Genomic Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Manuela Teresa RaimondiDepartment of Chemistry, Materials and Chemical Engineering "Giulio Natta", Politecnico di Milano, 20133 Milano, Italy.ORCID 0000-0003-2585-7206
Stephana CarelliDepartment of Biomedical and Clinical Sciences "L. Sacco", University of Milan, Via Grassi 74, 20157 Milan, Italy.ORCID 0000-0003-4603-396X
University of Milan · ITCenter for Genomic Science · ITPolitecnico di Milano · ITUniversity of Pavia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

3D cell cultures are becoming more and more important in the field of regenerative medicine due to their ability to mimic the cellular physiological microenvironment. Among the different types of 3D scaffolds, we focus on the Nichoid, a miniaturized scaffold with a structure inspired by the natural staminal niche. The Nichoid can activate cellular responses simply by subjecting the cells to mechanical stimuli. This kind of influence results in different cellular morphology and organization, but the molecular bases of these changes remain largely unknown. Through RNA-Seq approach on murine neural precursors stem cells expanded inside the Nichoid, we investigated the deregulated genes and pathways showing that the Nichoid causes alteration in genes strongly connected to mechanobiological functions. Moreover, we fully dissected this mechanism highlighting how the changes start at a membrane level, with subsequent alterations in the cytoskeleton, signaling pathways, and metabolism, all leading to a final alteration in gene expression. The results shown here demonstrate that the Nichoid influences the biological and genetic response of stem cells thorough specific alterations of cellular signaling. The characterization of these pathways elucidates the role of mechanical manipulation on stem cells, with possible implications in regenerative medicine applications.

Indexed as

AnimalsCell Culture TechniquesCells, CulturedCytoskeletonGene ExpressionMechanotransduction, CellularMiceMice, Inbred C57BLNeural Stem CellsRegenerative MedicineSignal TransductionStem Cell NicheTissue ScaffoldsTranscriptomecomputational genomicsmechanobiologymechanotransductionneural stem cellsnicheregenerative medicineRNA-Seqscaffoldssignal transduction

Identifiers

PMID32942778
PMCPMC7555048
OpenAlexW3086173166

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.