Evidence map›Paper›PMID 32941787›Full record

ArticleCell host & microbe2020

Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2.

Sandra C A Nielsen, Fan Yang, Katherine J L Jackson, Ramona A Hoh, Katharina Röltgen, Grace H Jean, Bryan A Stevens, Ji-Yeun Lee, Arjun Rustagi, Angela J Rogers and 15 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell host & microbe, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 179 papers.

0numbers the graph read from it
0cells of the map it votes in
179citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

179 citing papers in PubMed, 262 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Explore antibody repertoire in the era of AI.Acta biochimica et biophysica Sinica · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Long-term B cell memory emerges at uniform relative rates in the human immune response.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Article

119 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Sandra C A NielsenDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Fan YangDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Katherine J L JacksonGarvan Institute of Medical Research, Darlinghurst, NSW 2010, Australia.
Ramona A HohDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Katharina RöltgenDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Grace H JeanDepartment of Developmental Biology, Stanford University, Stanford, CA 94305, USA.
Bryan A StevensDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Ji-Yeun LeeDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Arjun RustagiDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA 94305, USA.
Angela J RogersDepartment of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University, Stanford, CA 94305, USA.
Abigail E PowellStanford ChEM-H and Department of Biochemistry, Stanford University, Stanford, CA 94305, USA.
Molly HunterATUM, Newark, CA, 94560, USA.
Javaria NajeebDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Ana R Otrelo-CardosoDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA.
Kathryn E YostCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Bence DanielDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Kari C NadeauDepartment of Medicine, Division of Pulmonary, Allergy and Critical Care Medicine, Stanford University, Stanford, CA 94305, USA; Sean N. Parker Center for Allergy and Asthma Research, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Howard Y ChangCenter for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA.
Ansuman T SatpathyDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Theodore S JardetzkyDepartment of Structural Biology, Stanford University, Stanford, CA 94305, USA; Sean N. Parker Center for Allergy and Asthma Research, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Peter S KimStanford ChEM-H and Department of Biochemistry, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA.
Taia T WangDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA; Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA.
Benjamin A PinskyDepartment of Pathology, Stanford University, Stanford, CA 94305, USA.
Catherine A BlishDepartment of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA. Electronic address: cblish@stanford.edu.
Scott D BoydDepartment of Pathology, Stanford University, Stanford, CA 94305, USA; Sean N. Parker Center for Allergy and Asthma Research, Stanford University School of Medicine, Stanford, CA, 94305, USA. Electronic address: sboyd1@stanford.edu.
Stanford University · USChan Zuckerberg Initiative (United States) · USStanford Medicine · USATUM (United States) · USGarvan Institute of Medical Research · AUHoward Hughes Medical Institute · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Understanding B cell memory in response to diverse virus infectionsU19AI111825 · NIAID · ROCKEFELLER UNIVERSITY · PI RAVETCH, JEFFREY VICTOR · 2014 to 2023
$26.0M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
Project 3: T CellsU54CA260517 · NCI · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2020 to 2024
$10.4M
EMERGING INFECTIOUS DISEASEST32AI007502 · NIAID · STANFORD UNIVERSITY · PI Prasanna Jagannathan, DAVID A. RELMAN · 1995 to 2026
$6.8M
Effects of aging on primary and secondary vaccine responses in a 15-year longitudinal cohortR01AI130398 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$4.0M
Targeting natural killer cells to HIV in intravenous drug usersDP1DA046089 · NIDA · STANFORD UNIVERSITY · PI BLISH, CATHERINE A · 2018 to 2022
$3.9M
Regulation of the IgG Fc domain repertoireR01AI139119 · NIAID · STANFORD UNIVERSITY · PI WANG, TAIA · 2019 to 2023
$2.8M
FUNCTIONAL ANALYSIS OF PATHOGENIC AND PROTECTIVE PEANUT ALLERGEN-SPECIFIC HUMAN ANTIBODIESR01AI125567 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2022
$2.6M
Storage and recall of human B cell memory of influenza over tissues and timeR01AI127877 · NIAID · STANFORD UNIVERSITY · PI BOYD, SCOTT DEXTER · 2017 to 2021
$2.0M
Metabolic derangements in ARDSK23HL125663 · NHLBI · STANFORD UNIVERSITY · PI ROGERS, ANGELA J · 2015 to 2018
$744k
Single cell epigenomics in cancer immunity and immunotherapyK08CA230188 · NCI · STANFORD UNIVERSITY · PI SATPATHY, ANSUMAN · 2018 to 2020
$448k
NCI NIH HHS K08 CA230188NCI NIH HHS U54 CA260517NHGRI NIH HHS RM1 HG007735NHLBI NIH HHS K23 HL125663NIAID NIH HHS R01 AI125567NIAID NIH HHS R01 AI127877NIAID NIH HHS R01 AI130398NIAID NIH HHS R01 AI139119NIAID NIH HHS T32 AI007502NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI111825NIDA NIH HHS DP1 DA046089
6 · The paper itself

Abstract

B cells are critical for the production of antibodies and protective immunity to viruses. Here we show that patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) who develop coronavirus disease 2019 (COVID-19) display early recruitment of B cells expressing a limited subset of IGHV genes, progressing to a highly polyclonal response of B cells with broader IGHV gene usage and extensive class switching to IgG and IgA subclasses with limited somatic hypermutation in the initial weeks of infection. We identify convergence of antibody sequences across SARS-CoV-2-infected patients, highlighting stereotyped naive responses to this virus. Notably, sequence-based detection in COVID-19 patients of convergent B cell clonotypes previously reported in SARS-CoV infection predicts the presence of SARS-CoV/SARS-CoV-2 cross-reactive antibody titers specific for the receptor-binding domain. These findings offer molecular insights into shared features of human B cell responses to SARS-CoV-2 and SARS-CoV.

Indexed as

AdultAgedAged, 80 and overAntibodies, ViralAntibody FormationBetacoronavirusB-LymphocytesCoronavirus InfectionsCOVID-19FemaleHEK293 CellsHumansImmunogeneticsImmunoglobulin AImmunoglobulin GMaleAntibodies, ViralImmunoglobulin AImmunoglobulin GSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2antibodiesantibody repertoireB cellsclonal expansionconvergent antibody responseCOVID-19immunogeneticsimmunologyprimary infectionSARS-CoV-2

Identifiers

PMID32941787
PMCPMC7470783
OpenAlexW3081530068

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.