Evidence map›Paper›PMID 32941010›Full record

ArticleBiochemistry2020

Noncompetitive Allosteric Antagonism of Death Receptor 5 by a Synthetic Affibody Ligand.

Nagamani Vunnam, Sophia Szymonski, Petra Hirsova, Gregory J Gores, Jonathan N Sachs, Benjamin J Hackel

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Peptide-based allosteric inhibitor targets TNFR1 conformationally active region and disables receptor-ligand signaling complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nagamani VunnamDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States.
Sophia SzymonskiDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States.
Petra HirsovaDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55905, United States.
Gregory J GoresDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota 55905, United States.
Jonathan N SachsDepartment of Biomedical Engineering, University of Minnesota, Minneapolis, Minnesota 55455, United States.ORCID 0000-0003-1403-5960
Benjamin J HackelDepartment of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, United States.ORCID 0000-0003-3561-9463
University of Minnesota · USMayo Clinic · US

Funding

MECHANISMS OF LIVER CELL INJURYR01DK041876 · NIDDK · MAYO CLINIC ROCHESTER · PI GORES, GREGORY J. · 1992 to 2019
$3.6M
Understanding the structural dynamics of TNF receptorsR35GM131814 · NIGMS · UNIVERSITY OF MINNESOTA · PI SACHS, JONATHAN N · 2019 to 2023
$2.0M
Engineering synthetic ligands with potent allosteric inhibition of tumornecrosis factor receptorsR01EB028274 · NIBIB · UNIVERSITY OF MINNESOTA · PI HACKEL, BENJAMIN, SACHS, JONATHAN N · 2019 to 2022
$1.5M
Engineering Gp2 as a small ligand scaffoldR01EB023339 · NIBIB · UNIVERSITY OF MINNESOTA · PI HACKEL, BENJAMIN · 2017 to 2020
$1.3M
Protein engineered inhibitors of TNF Receptor activation: new therapeutics and new technologyR21AI144932 · NIAID · UNIVERSITY OF MINNESOTA · PI SACHS, JONATHAN N · 2019 to 2020
$391k
NIAID NIH HHS R21 AI144932NIBIB NIH HHS R01 EB023339NIBIB NIH HHS R01 EB028274NIDDK NIH HHS R01 DK041876NIGMS NIH HHS R35 GM131814
6 · The paper itself

Abstract

Fatty acid-induced upregulation of death receptor 5 (DR5) and its cognate ligand, tumor necrosis factor-related apoptosis-inducing ligand (TRAIL), promotes hepatocyte lipoapoptosis, which is a key mechanism in the progression of fatty liver disease. Accordingly, inhibition of DR5 signaling represents an attractive strategy for treating fatty liver disease. Ligand competition strategies are prevalent in tumor necrosis factor receptor antagonism, but recent studies have suggested that noncompetitive inhibition through perturbation of the receptor conformation may be a compelling alternative. To this end, we used yeast display and a designed combinatorial library to identify a synthetic 58-amino acid affibody ligand that specifically binds DR5. Biophysical and biochemical studies show that the affibody neither blocks TRAIL binding nor prevents the receptor-receptor interaction. Live-cell fluorescence lifetime measurements indicate that the affibody induces a conformational change in transmembrane dimers of DR5 and favors an inactive state of the receptor. The affibody inhibits apoptosis in TRAIL-treated Huh-7 cells, an

Indexed as

ApoptosisCell Line, TumorDrug DiscoveryHEK293 CellsHepatocytesHumansLigandsPeptidesProtein MultimerizationReceptors, TNF-Related Apoptosis-Inducing LigandTNF-Related Apoptosis-Inducing LigandLigandsPeptidesReceptors, TNF-Related Apoptosis-Inducing LigandTNF-Related Apoptosis-Inducing LigandTNFRSF10B protein, human

Identifiers

PMID32941010
PMCPMC7658720
OpenAlexW3087742703

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.