Evidence map›Paper›PMID 32940424›Full record

ArticleCurrent protocols in immunology2020

Establishment and Culture of Human Intestinal Organoids Derived from Adult Stem Cells.

Cayetano Pleguezuelos-Manzano, Jens Puschhof, Stieneke van den Brink, Veerle Geurts, Joep Beumer, Hans Clevers

Erratum issued Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in Current protocols in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. It is linked to trial NCT05323357 (Establishment of Human Organoid Lines as a Tool to Dissect Molecular Pathways of Host-microbiota Interactions), which is not on this map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05323357 recruitingnot on this mapstarted 2022, after this paper: background citation

Establishment of Human Organoid Lines as a Tool to Dissect Molecular Pathways of Host-microbiota Interactions

Typeobservational_patient_registrySponsorInsel Gruppe AG, University Hospital BernRan2022 to 2026Enrolled100ConditionsOrganoids, Allergy and Immunology, Microbiota
3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 253 citations in OpenAlex.

  1. Article
  2. Discovery of a secretedGut microbes · 2026
    Article
  3. Gut microbes · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Adaptation ofmSystems · 2026
    Article
  18. Article
  19. Article
  20. Article

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Cayetano Pleguezuelos-ManzanoHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Jens PuschhofHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Stieneke van den BrinkHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Veerle GeurtsHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Joep BeumerHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Hans CleversHubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and UMC Utrecht, Utrecht, The Netherlands.
Oncode Institute · NLRoyal Netherlands Academy of Arts and Sciences · NLPrincess Máxima Center · NL

Funding

Cancer Research UK 27140Cancer Research UK C10674/A27140
6 · The paper itself

Abstract

Human intestinal organoids derived from adult stem cells are miniature ex vivo versions of the human intestinal epithelium. Intestinal organoids are useful tools for the study of intestinal physiology as well as many disease conditions. These organoids present numerous advantages compared to immortalized cell lines, but working with them requires dedicated techniques. The protocols described in this article provide a basic guide to establishment and maintenance of human intestinal organoids derived from small intestine and colon biopsies. Additionally, this article provides an overview of several downstream applications of human intestinal organoids. © 2020 The Authors. Basic Protocol 1: Establishment of human small intestine and colon organoid cultures from fresh biopsies Basic Protocol 2: Mechanical splitting, passage, and expansion of human intestinal organoids Alternate Protocol: Differentiation of human intestinal organoids Basic Protocol 3: Cryopreservation and thawing of human intestinal organoids Basic Protocol 4: Immunofluorescence staining of human intestinal organoids Basic Protocol 5: Generation of single-cell clonal intestinal organoid cultures Support Protocol 1: Production of Wnt3A conditioned medium Support Protocol 2: Production of Rspo1 conditioned medium Support Protocol 3: Extraction of RNA from intestinal organoid cultures.

Indexed as

Cell Culture TechniquesTissue Culture TechniquesAdult Stem CellsBiomarkersBiopsyCell DifferentiationCells, CulturedCell SeparationColonCryopreservationCulture Media, ConditionedFluorescent Antibody TechniqueHumansImmunohistochemistryImmunophenotypingIntestinal MucosaBiomarkersCulture Media, Conditionedadult stem cellshuman intestinal organoidsorganoid cryopreservationorganoid culture establishmentorganoid differentiationorganoid immunofluorescenceorganoid passagesingle-cell clonal organoid culturespecialized organoid reagents

Identifiers

PMID32940424
PMCPMC9285512
OpenAlexW3087000711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.