Evidence map›Paper›PMID 32939280›Full record

ArticleIUCrJ2020

Deep learning enables the atomic structure determination of the Fanconi Anemia core complex from cryoEM.

Daniel P Farrell, Ivan Anishchenko, Shabih Shakeel, Anna Lauko, Lori A Passmore, David Baker, Frank DiMaio

Abstract read
In one paragraph

Article in IUCrJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Daniel P FarrellDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.ORCID https://orcid.org/0000-0001-7024-7998
Ivan AnishchenkoDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.
Shabih ShakeelMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0003-3651-6087
Anna LaukoDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.ORCID https://orcid.org/0000-0001-5903-3518
Lori A PassmoreMRC Laboratory of Molecular Biology, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0003-1815-3710
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA 98105, USA.ORCID https://orcid.org/0000-0002-7524-8938

Funding

Protein structure determination from low-resolution experimental dataR01GM123089 · NIGMS · UNIVERSITY OF WASHINGTON · PI DIMAIO, FRANK P · 2017 to 2025
$2.6M
Medical Research Council MC_U105192715NIGMS NIH HHS R01 GM123089
6 · The paper itself

Abstract

Cryo-electron microscopy of protein complexes often leads to moderate resolution maps (4-8 Å), with visible secondary-structure elements but poorly resolved loops, making model building challenging. In the absence of high-resolution structures of homologues, only coarse-grained structural features are typically inferred from these maps, and it is often impossible to assign specific regions of density to individual protein subunits. This paper describes a new method for overcoming these difficulties that integrates predicted residue distance distributions from a deep-learned convolutional neural network, computational protein folding using

Indexed as

cryoEMdeep learningdistance predictionsFanconi anemia core complex

Identifiers

PMID32939280
PMCPMC7467173

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.