Evidence map›Paper›PMID 32938962›Full record

ArticleScientific reports2020

Mechanism for the reactivation of the peroxidase activity of human cyclooxygenases: investigation using phenol as a reducing cosubstrate.

Chengxi Yang, Peng Li, Xiaoli Ding, Hao Chen Sui, Shun Rao, Chia-Hsiang Hsu, Wing-Por Leung, Gui-Juan Cheng, Pan Wang, Bao Ting Zhu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Pharmaceuticals (Basel, Switzerland) · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Chengxi Yang *Shenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Peng Li *Shenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Xiaoli DingShenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Hao Chen SuiSchool of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Shun RaoSchool of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Chia-Hsiang HsuSchool of Science and Engineering, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Wing-Por LeungShenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Gui-Juan ChengShenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China.
Pan WangShenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China. wangpan@CUHK.edu.cn.
Bao Ting ZhuShenzhen Key Laboratory of Steroid Drug Discovery and Development, The Chinese University of Hong Kong, Shenzhen, 518172, China. BTZhu@CUHK.edu.cn.
Chinese University of Hong Kong, Shenzhen · CNShenzhen Bay Laboratory · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been known for many years that the peroxidase activity of cyclooxygenase 1 and 2 (COX-1 and COX-2) can be reactivated in vitro by the presence of phenol, which serves as a reducing compound, but the underlying mechanism is still poorly understood. In the present study, we use phenol as a model compound to investigate the mechanism by which the peroxidase activity of human COXs is reactivated after each catalytic cycle. Molecular docking and quantum mechanics calculations are carried out to probe the interaction of phenol with the peroxidase site of COXs and the reactivation mechanism. It is found that the oxygen atom associated with the Fe ion in the heme group (i.e., the complex of Fe ion and porphyrin) of COXs can be removed by addition of two protons. Following its removal, phenol can readily bind inside the peroxidase active sites of the COX enzymes, and directly interact with Fe in heme to facilitate electron transfer from phenol to heme. This investigation provides theoretical evidence for several intermediates formed in the COX peroxidase reactivation cycle, thereby unveiling mechanistic details that would aid in future rational design of drugs that target the peroxidase site.

Indexed as

CatalysisEnzyme ActivationHumansModels, MolecularModels, TheoreticalMolecular Docking SimulationOxidation-ReductionPeroxidasePhenolProstaglandin-Endoperoxide SynthasesProtein ConformationSubstrate SpecificityPeroxidasePhenolProstaglandin-Endoperoxide Synthases

Identifiers

PMID32938962
PMCPMC7494923
OpenAlexW3087465731

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.