Evidence map›Paper›PMID 32938929›Full record

ArticleNature communications2020

Translational induction of ATF4 during integrated stress response requires noncanonical initiation factors eIF2D and DENR.

Deepika Vasudevan, Sarah D Neuman, Amy Yang, Lea Lough, Brian Brown, Arash Bashirullah, Timothy Cardozo, Hyung Don Ryoo

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 101 citations in OpenAlex.

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  18. Circadian Control of Protein Synthesis.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Deepika VasudevanDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID http://orcid.org/0000-0003-1930-3549
Sarah D NeumanDepartment of Pharmaceutical Sciences, University of Wisconsin-Madison, Madison, WI, 53705, USA.ORCID http://orcid.org/0000-0001-5731-6426
Amy YangDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID http://orcid.org/0000-0001-6727-1364
Lea LoughDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Brian BrownDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Arash BashirullahDepartment of Pharmaceutical Sciences, University of Wisconsin-Madison, Madison, WI, 53705, USA.
Timothy CardozoDepartment of Biochemistry and Molecular Pharmacology, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID http://orcid.org/0000-0002-0643-4497
Hyung Don RyooDepartment of Cell Biology, New York University Grossman School of Medicine, New York, NY, 10016, USA. hyungdon.ryoo@nyumc.org.ORCID http://orcid.org/0000-0002-1046-535X
New York University · USUniversity of Wisconsin–Madison · US

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Cale Whitworth · 2014 to 2026
$13.5M
Unfolded Protein Response in Eye Development and DiseaseR01EY020866 · NEI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HYUNG D RYOO · 2010 to 2026
$6.9M
Chemical Biology Design For MalariaDP2OD004631 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARDOZO, TIMOTHY J · 2008 to 2014
$3.1M
Genetic analysis of regulated exocytosis during Drosophila developmentR01GM123204 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BASHIRULLAH, ARASH · 2017 to 2020
$1.4M
Translation control of stress response and innate immunityR01GM125954 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RYOO, HYUNG D · 2018 to 2021
$1.4M
ER stress-induced translational regulation in retinal degenerationK99EY029013 · NEI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI VASUDEVAN, DEEPIKA · 2018 to 2020
$254k
NEI NIH HHS K99 EY029013NEI NIH HHS R01 EY020866NIGMS NIH HHS R01 GM123204NIGMS NIH HHS R01 GM125954NIH HHS DP2 OD004631NIH HHS P40 OD018537
6 · The paper itself

Abstract

The Integrated Stress Response (ISR) helps metazoan cells adapt to cellular stress by limiting the availability of initiator methionyl-tRNA for translation. Such limiting conditions paradoxically stimulate the translation of ATF4 mRNA through a regulatory 5' leader sequence with multiple upstream Open Reading Frames (uORFs), thereby activating stress-responsive gene expression. Here, we report the identification of two critical regulators of such ATF4 induction, the noncanonical initiation factors eIF2D and DENR. Loss of eIF2D and DENR in Drosophila results in increased vulnerability to amino acid deprivation, susceptibility to retinal degeneration caused by endoplasmic reticulum (ER) stress, and developmental defects similar to ATF4 mutants. eIF2D requires its RNA-binding motif for regulation of 5' leader-mediated ATF4 translation. Consistently, eIF2D and DENR deficient human cells show impaired ATF4 protein induction in response to ER stress. Altogether, our findings indicate that eIF2D and DENR are critical mediators of ATF4 translational induction and stress responses in vivo.

Indexed as

Protein BiosynthesisActivating Transcription Factor 4AnimalsAnimals, Genetically ModifiedBinding SitesCell LineDrosophila melanogasterDrosophila ProteinsEndoplasmic Reticulum StressEukaryotic Initiation Factor-2Eukaryotic Initiation FactorsHumansMutationOpen Reading FramesRetinal DegenerationRNA InterferenceActivating Transcription Factor 4ATF4 protein, humancrc protein, DrosophilaDENR protein, DrosophilaDENR protein, humanDrosophila ProteinseIF2D protein, humanEukaryotic Initiation Factor-2Eukaryotic Initiation FactorsTranscription Factors

Identifiers

PMID32938929
PMCPMC7495428
OpenAlexW3087141692

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.