Evidence map›Paper›PMID 32938797›Full record

ArticleScience translational medicine2020

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect.

Pavan Bachireddy, Christina Ennis, Vinhkhang N Nguyen, Satyen H Gohil, Kendell Clement, Sachet A Shukla, Juliet Forman, Nikolaos Barkas, Samuel Freeman, Natalie Bavli and 17 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 2 countries.

Pavan BachireddyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.ORCID 0000-0002-8698-4957
Christina EnnisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Vinhkhang N NguyenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Satyen H GohilDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.ORCID 0000-0003-0484-991X
Kendell ClementBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.ORCID 0000-0003-3808-0811
Sachet A ShuklaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.ORCID 0000-0003-2445-3584
Juliet FormanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Nikolaos BarkasBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.ORCID 0000-0002-4675-0718
Samuel FreemanBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.ORCID 0000-0001-8285-0057
Natalie BavliDivision of Hematology and Oncology, UT Southwestern, Dallas, TX 75390, USA.
Liudmila ElaginaBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Ignaty LeshchinerBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Arman W MohammadBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Nathan D MathewsonHarvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-8895-2609
Derin B KeskinDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.ORCID 0000-0002-8496-6181
Laura Z RassentiMoores Cancer Center, University of California, San Diego, La Jolla, CA 92037, USA.
Thomas J KippsMoores Cancer Center, University of California, San Diego, La Jolla, CA 92037, USA.ORCID 0000-0002-0064-4549
Jennifer R BrownDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.ORCID 0000-0003-2040-4961
Gad GetzHarvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-0936-0753
Vincent T HoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Andreas GnirkeBroad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Donna NeubergDepartment of Data Sciences, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0003-2566-3145
Robert J SoifferDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Jerome RitzDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Edwin P AlyeaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA.
Peter V KharchenkoDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-6036-5875
Catherine J WuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02215, USA. cwu@partners.org.ORCID 0000-0002-3348-5054
Broad Institute · USBrigham and Women's Hospital · USHarvard University · USUniversity of California San Diego · USDana-Farber Cancer Institute · USSouthwestern Medical Center · US

Funding

VectorP30CA006516 · NCI · DANA-FARBER CANCER INSTITUTE · PI A. Heather Eliassen · 1985 to 2026
$330.6M
Treating the P13-Kinase/AKTP50CA101942 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI Wanling Xie · 2003 to 2026
$53.4M
ProteomicsP01CA206978 · NCI · DANA-FARBER CANCER INST · PI CARR, STEVEN A · 2016 to 2025
$17.0M
Training Program in Bioinformatics and Integrative GenomicsT32HG002295 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Peter J Park · 2001 to 2026
$15.8M
Single Cell and ImmunogenomicsP01CA229092 · NCI · DANA-FARBER CANCER INST · PI SOIFFER, ROBERT JON · 2019 to 2023
$13.8M
Personal tumor neoantigens for immunity against chronic lymphocytic leukemiaR01CA155010 · NCI · DANA-FARBER CANCER INST · PI Catherine Ju-Ying Wu · 2011 to 2026
$9.6M
ITSC for Leukemia: Novel Molecular strategies for NCTN "Individualized" TherapiesUG1CA233338 · NCI · UNIVERSITY OF CINCINNATI · PI BYRD, JOHN C. · 2019 to 2025
$4.5M
ITSC for Leukemia: Novel Molecular Strategies for NCTN: "Individualized" TherapieU10CA180861 · NCI · OHIO STATE UNIVERSITY · PI BLOOMFIELD, CLARA D, MARCUCCI, GUIDO · 2014 to 2018
$3.4M
Statistical methods for analysis of single-cell variabilityR01HL131768 · NHLBI · HARVARD MEDICAL SCHOOL · PI KHARCHENKO, PETER V · 2015 to 2019
$2.4M
Immunogenomic analytical approaches for research and clinical applicationsR50CA211482 · NCI · DANA-FARBER CANCER INST · PI SHUKLA, SACHET ASHOK · 2016 to 2020
$1.3M
Physical detection of HLA-C binding peptides to identify and predict immunogenic personal neoepitopes for improving cancer vaccinesR21CA216772 · NCI · DANA-FARBER CANCER INST · PI KESKIN, DERIN B · 2018 to 2019
$420k
NCI NIH HHS L30 CA231679NCI NIH HHS P01 CA206978NCI NIH HHS P01 CA229092NCI NIH HHS P30 CA006516NCI NIH HHS P50 CA101942NCI NIH HHS R01 CA155010NCI NIH HHS R21 CA216772NCI NIH HHS R50 CA211482NCI NIH HHS U10 CA180861NCI NIH HHS UG1 CA233338NHGRI NIH HHS T32 HG002295NHLBI NIH HHS R01 HL131768
6 · The paper itself

Abstract

Leukemic relapse remains a major barrier to successful allogeneic hematopoietic stem cell transplantation (allo-HSCT) for aggressive hematologic malignancies. The basis for relapse of advanced lymphoid malignancies remains incompletely understood and may involve escape from the graft-versus-leukemia (GvL) effect. We hypothesized that for patients with chronic lymphocytic leukemia (CLL) treated with allo-HSCT, leukemic cell-intrinsic features influence transplant outcomes by directing the evolutionary trajectories of CLL cells. Integrated genetic, transcriptomic, and epigenetic analyses of CLL cells from 10 patients revealed that the clinical kinetics of post-HSCT relapse are shaped by distinct molecular dynamics. Early relapses after allo-HSCT exhibited notable genetic stability; single CLL cell transcriptional analysis demonstrated a cellular heterogeneity that was static over time. In contrast, CLL cells relapsing late after allo-HSCT displayed notable genetic evolution and evidence of neoantigen depletion, consistent with marked single-cell transcriptional shifts that were unique to each patient. We observed a greater rate of epigenetic change for late relapses not seen in early relapses or relapses after chemotherapy alone, suggesting that the selection pressures of the GvL bottleneck are unlike those imposed by chemotherapy. No selective advantage for human leukocyte antigen (HLA) loss was observed, even when present in pretransplant subpopulations. Gain of stem cell modules was a common signature associated with leukemia relapse regardless of posttransplant relapse kinetics. These data elucidate the biological pathways that underlie GvL resistance and posttransplant relapse.

Indexed as

Graft vs Host DiseaseHematopoietic Stem Cell TransplantationLeukemia, Lymphocytic, Chronic, B-CellGraft vs Leukemia EffectHLA AntigensHumansTransplantation, HomologousHLA Antigens

Identifiers

PMID32938797
PMCPMC7829680
OpenAlexW3087407767

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.