Evidence map›Paper›PMID 32938763›Full record

ArticleJournal of virology2020

Cryo-electron Microscopy Structure, Assembly, and Mechanics Show Morphogenesis and Evolution of Human Picobirnavirus.

Álvaro Ortega-Esteban, Carlos P Mata, María J Rodríguez-Espinosa, Daniel Luque, Nerea Irigoyen, Javier M Rodríguez, Pedro J de Pablo, José R Castón

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

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  8. Mechanical Properties of Viruses.Sub-cellular biochemistry · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Álvaro Ortega-Esteban *Department of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain.
Carlos P Mata *Department of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain.
María J Rodríguez-EspinosaDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain.
Daniel LuqueCentro Nacional de Microbiología/ISCIII, Majadahonda, Madrid, Spain.
Nerea IrigoyenDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain.ORCID 0000-0001-6346-3369
Javier M RodríguezDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain.
Pedro J de PabloDepartment of Condensed Matter Physics, Universidad Autónoma de Madrid, Madrid, Spain.ORCID 0000-0003-2386-3186
José R CastónDepartment of Structure of Macromolecules, Centro Nacional de Biotecnología, Madrid, Spain jrcaston@cnb.csic.es.ORCID 0000-0003-2350-9048
Centro Nacional de Biotecnología · ESInstituto de Salud Carlos III · ESUniversidad Autónoma de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite their diversity, most double-stranded-RNA (dsRNA) viruses share a specialized T=1 capsid built from dimers of a single protein that provides a platform for genome transcription and replication. This ubiquitous capsid remains structurally undisturbed throughout the viral cycle, isolating the genome to avoid triggering host defense mechanisms. Human picobirnavirus (hPBV) is a dsRNA virus frequently associated with gastroenteritis, although its pathogenicity is yet undefined. Here, we report the cryo-electron microscopy (cryo-EM) structure of hPBV at 2.6-Å resolution. The capsid protein (CP) is arranged in a single-shelled, ∼380-Å-diameter T=1 capsid with a rough outer surface similar to that of dsRNA mycoviruses. The hPBV capsid is built of 60 quasisymmetric CP dimers (A and B) stabilized by domain swapping, and only the CP-A N-terminal basic region interacts with the packaged nucleic acids. hPBV CP has an α-helical domain with a fold similar to that of fungal partitivirus CP, with many domain insertions in its C-terminal half. In contrast to dsRNA mycoviruses, hPBV has an extracellular life cycle phase like complex reoviruses, which indicates that its own CP probably participates in cell entry. Using an

Indexed as

CapsidCapsid ProteinsCryoelectron MicroscopyGenome, ViralHumansModels, MolecularPicobirnavirusProtein ConformationProtein Conformation, alpha-HelicalProtein DomainsRNA, Double-StrandedVirionVirus AssemblyCapsid ProteinsRNA, Double-Stranded3D cryo-EMcapsid proteindsRNA virushPBVvirus assembly

Identifiers

PMID32938763
PMCPMC7925173
OpenAlexW3085832946

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.