Evidence map›Paper›PMID 32938761›Full record

ArticleJournal of virology2020

Type I Interferon Susceptibility Distinguishes SARS-CoV-2 from SARS-CoV.

Kumari G Lokugamage, Adam Hage, Maren de Vries, Ana M Valero-Jimenez, Craig Schindewolf, Meike Dittmann, Ricardo Rajsbaum, Vineet D Menachery

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 310 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
310citing papers in PubMed, 3 pooled it
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

310 citing papers in PubMed, 3 syntheses or guidelines pooled it, 413 citations in OpenAlex.

  1. Pooled it
  2. Innate immunity to SARS-CoV-2 infection: a review.Epidemiology and infection · 2022
    Pooled it
  3. Pooled it
  4. An open-label randomized controlled trial of the effect of lopinavir/ritonavir, lopinavir/ritonavir plus IFN-β-1a and hydroxychloroquine in hospitalized patients with COVID-19.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2021
    Trial
  5. Trial
  6. Efficacy and safety of pegylated interferon-α2b in moderate COVID-19: a phase 3, randomized, comparator-controlled, open-label study.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2021
    Trial
  7. Review
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  18. Stimulation of Peripheral Blood Mononuclear Cells withInternational journal of molecular sciences · 2025
    Article
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250 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Kumari G Lokugamage *Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Adam Hage *Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Maren de VriesDepartment of Microbiology, New York University School of Medicine, New York, New York, USA.
Ana M Valero-JimenezDepartment of Microbiology, New York University School of Medicine, New York, New York, USA.
Craig SchindewolfDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Meike DittmannDepartment of Microbiology, New York University School of Medicine, New York, New York, USA.
Ricardo RajsbaumDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA.
Vineet D MenacheryDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas, USA Vimenach@utmb.edu.ORCID 0000-0001-8803-7606
The University of Texas Medical Branch at Galveston · USNew York University · US

Funding

Unlocking Zika Virus Immune Control and Pathogenesis with the Collaborative CrossU19AI100625 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S, HEISE, MARK T · 2012 to 2021
$36.6M
World Reference Center for Emerging Viruses and Arboviruses (WRCEVA)R24AI120942 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI WEAVER, SCOTT C · 2016 to 2024
$8.5M
Regulation of Ebola virus replication by the host ubiquitin systemR01AI134907 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GIRALDO, MARIA ISABEL · 2018 to 2022
$3.1M
EMERGING AND TROPICAL INFECTIOUS DISEASEST32AI007526 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI SOONG, LYNN · 1997 to 2025
$3.1M
ELF1 - Molecular mechanisms of a novel transcription factor with broad antiviral activityR01AI143639 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 2019 to 2023
$2.5M
Systems Based Analysis of Host Factors that Contribute to Aging PathogenesisR00AG049092 · NIA · UNIVERSITY OF TEXAS MED BR GALVESTON · PI MENACHERY, VINEET D · 2017 to 2019
$736k
SERPINs as a novel family of innate antiviral molecules - Resubmission - 1R21AI139374 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DITTMANN, MEIKE · 2019 to 2020
$466k
Unanchored Polyubiquitin Chains and Innate Immunity to Influenza VirusR21AI126012 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI RAJSBAUM, RICARDO · 2017 to 2018
$426k
NIAID NIH HHS R01 AI134907NIAID NIH HHS R01 AI143639NIAID NIH HHS R21 AI126012NIAID NIH HHS R21 AI139374NIAID NIH HHS R24 AI120942NIAID NIH HHS T32 AI007526NIAID NIH HHS U19 AI100625NIA NIH HHS R00 AG049092
6 · The paper itself

Abstract

SARS-CoV-2, a novel coronavirus (CoV) that causes COVID-19, has recently emerged causing an ongoing outbreak of viral pneumonia around the world. While distinct from SARS-CoV, both group 2B CoVs share similar genome organization, origins to bat CoVs, and an arsenal of immune antagonists. In this report, we evaluate type I interferon (IFN-I) sensitivity of SARS-CoV-2 relative to the original SARS-CoV. Our results indicate that while SARS-CoV-2 maintains similar viral replication to SARS-CoV, the novel CoV is much more sensitive to IFN-I. In Vero E6 and in Calu3 cells, SARS-CoV-2 is substantially attenuated in the context of IFN-I pretreatment, whereas SARS-CoV is not. In line with these findings, SARS-CoV-2 fails to counteract phosphorylation of STAT1 and expression of ISG proteins, while SARS-CoV is able to suppress both. Comparing SARS-CoV-2 and influenza A virus in human airway epithelial cultures, we observe the absence of IFN-I stimulation by SARS-CoV-2 alone but detect the failure to counteract STAT1 phosphorylation upon IFN-I pretreatment, resulting in near ablation of SARS-CoV-2 infection. Next, we evaluated IFN-I treatment postinfection and found that SARS-CoV-2 was sensitive even after establishing infection. Finally, we examined homology between SARS-CoV and SARS-CoV-2 in viral proteins shown to be interferon antagonists. The absence of an equivalent open reading frame 3b (ORF3b) and genetic differences versus ORF6 suggest that the two key IFN-I antagonists may not maintain equivalent function in SARS-CoV-2. Together, the results identify key differences in susceptibility to IFN-I responses between SARS-CoV and SARS-CoV-2 that may help inform disease progression, treatment options, and animal model development.

Indexed as

AnimalsAntiviral AgentsBetacoronavirusCell LineCell Line, TumorChlorocebus aethiopsHumansInterferon-alphaInterferon Type IPhosphorylationRecombinant ProteinsSARS-CoV-2Severe acute respiratory syndrome-related coronavirusSignal TransductionSTAT1 Transcription FactorVero CellsAntiviral AgentsInterferon-alphaInterferon Type IRecombinant ProteinsSTAT1 Transcription FactorViral Proteins2019-nCoVcoronavirusCOVID-19IFNinterferonSARS-CoVSARS-CoV-2type I interferon

Identifiers

PMID32938761
PMCPMC7654262
OpenAlexW3085718285

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.