Evidence map›Paper›PMID 32938715›Full record

ArticleThe Journal of biological chemistry2020

Rate-limiting pyrophosphate release by hepatitis C virus polymerase NS5B improves fidelity.

Brian Villalba, Kenneth A Johnson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Slow PPThe Journal of biological chemistry · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Dissecting nucleotide selectivity in viral RNA polymerases.Computational and structural biotechnology journal · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Brian VillalbaInstitutes for Cell and Molecular Biology, University of Texas at Austin, Austin, Texas, USA.
Kenneth A JohnsonInstitutes for Cell and Molecular Biology, University of Texas at Austin, Austin, Texas, USA. Electronic address: kajohnson@mail.utexas.edu.
The University of Texas at Austin · US

Funding

Dynamics of Hepatis C viral RNA-dependent RNA replicationR01AI110577 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI JOHNSON, KENNETH ALLEN · 2015 to 2018
$1.8M
NIAID NIH HHS R01 AI110577
6 · The paper itself

Abstract

The hepatitis C virus RNA-dependent RNA polymerase NS5B is responsible for the replication of the viral genome. Previous studies have uncovered NTP-mediated excision mechanisms that may be responsible for aiding in maintaining fidelity (the frequency of incorrect incorporation events relative to correct), but little is known about the fidelity of NS5B. In this study, we used transient-state kinetics to examine the mechanistic basis for polymerase fidelity. We observe a wide range of efficiency for incorporation of various mismatched base pairs and have uncovered a mechanism in which the rate constant for pyrophosphate release is slowed for certain misincorporation events. This results in an increase in fidelity against these specific misincorporations. Furthermore, we discover that some mismatches are highly unfavorable and cannot be observed under the conditions used here. The calculated fidelity of NS5B ranges between 10

Indexed as

DiphosphatesHepacivirusRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural ProteinsDiphosphatesdiphosphoric acidNS-5 protein, hepatitis C virusRNA-Dependent RNA PolymeraseRNA, ViralViral Nonstructural Proteinsenzyme kineticshepatitis C virus (HCV)NS5Bpolymerase fidelitypre-steady-state kineticsRNA polymeraseviral polymerase

Identifiers

PMID32938715
PMCPMC7705305
OpenAlexW3087407837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.