Evidence map›Paper›PMID 32937677›Full record

ArticleApplied clinical informatics2020

A Web Application for Adrenal Incidentaloma Identification, Tracking, and Management Using Machine Learning.

Wasif Bala, Jackson Steinkamp, Timothy Feeney, Avneesh Gupta, Abhinav Sharma, Jake Kantrowitz, Nicholas Cordella, James Moses, Frederick Thurston Drake

Abstract read
In one paragraph

Article in Applied clinical informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wasif BalaBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
Jackson SteinkampBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
Timothy FeeneyBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
Avneesh GuptaBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
Abhinav SharmaDepartment of Family Medicine, Sunnybrook Health Sciences Centre, University of Toronto, Toronto, Ontario, Canada.
Jake KantrowitzDepartment of Internal Medicine, Kent Hospital, Brown University Alpert Medical School, Warwick, Rhode Island, United States.
Nicholas CordellaBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
James MosesBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.
Frederick Thurston DrakeBoston Medical Center, One Boston Medical Center Pl, Boston, Massachusetts, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIncidental radiographic findings, such as adrenal nodules, are commonly identified in imaging studies and documented in radiology reports. However, patients with such findings frequently do not receive appropriate follow-up, partially due to the lack of tools for the management of such findings and the time required to maintain up-to-date lists. Natural language processing (NLP) is capable of extracting information from free-text clinical documents and could provide the basis for software solutions that do not require changes to clinical workflows.

objectivesIn this manuscript we present (1) a machine learning algorithm we trained to identify radiology reports documenting the presence of a newly discovered adrenal incidentaloma, and (2) the web application and results database we developed to manage these clinical findings.

methodsWe manually annotated a training corpus of 4,090 radiology reports from across our institution with a binary label indicating whether or not a report contains a

resultsThe annotated dataset included 404 positive (9.9%) and 3,686 (90.1%) negative reports. Our model achieved a sensitivity of 92.9% (95% confidence interval: 80.9-97.5%), a positive predictive value of 83.0% (69.9-91.1)%, a specificity of 97.8% (95.8-98.9)%, and an F1 score of 87.6%. We developed a front-end web application based on the model's output.

conclusionDeveloping an NLP-enabled custom web application for tracking and management of high-risk adrenal incidentalomas is feasible in a resource constrained, safety net hospital. Such applications can be used by an institution's quality department or its primary care providers and can easily be generalized to other types of clinical findings.

Indexed as

Incidental FindingsInternetMachine LearningRadiographyAdrenal Gland DiseasesDatabases, FactualHumansMedical InformaticsNatural Language ProcessingRiskSoftware

Identifiers

PMID32937677
PMCPMC7542219

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.