Evidence map›Paper›PMID 32936832›Full record

ArticlePloS one2020

Most frequent South Asian haplotypes of ACE2 share identity by descent with East Eurasian populations.

Anshika Srivastava, Rudra Kumar Pandey, Prajjval Pratap Singh, Pramod Kumar, Avinash Arvind Rasalkar, Rakesh Tamang, George van Driem, Pankaj Shrivastava, Gyaneshwer Chaubey

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. The immunogenetics of COVID-19.Immunogenetics · 2023
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Lineage-specific positive selection onNational science review · 2022
    Article
  11. Review
  12. Article
  13. Article
  14. Host polymorphisms and COVID-19 infection.Advances in clinical chemistry · 2022
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Anshika SrivastavaDepartment of Zoology, Cytogenetics Laboratory, Banaras Hindu University, Varanasi, India.
Rudra Kumar PandeyDepartment of Zoology, Cytogenetics Laboratory, Banaras Hindu University, Varanasi, India.
Prajjval Pratap SinghDepartment of Zoology, Cytogenetics Laboratory, Banaras Hindu University, Varanasi, India.
Pramod KumarNational Centre for Disease Control, Delhi, India.
Avinash Arvind RasalkarRedcliffe Life Sciences Pvt Ltd, Electronic City, Noida, Uttar Pradesh, India.
Rakesh TamangDepartment of Zoology, University of Calcutta, Kolkata, India.
George van DriemInstitut für Sprachwissenschaft, Universität Bern, Bern, Switzerland.
Pankaj ShrivastavaDepartment of Home (Police), DNA Fingerprinting Unit, State Forensic Science Laboratory, Government of MP, Sagar, India.ORCID 0000-0002-1647-2390
Gyaneshwer ChaubeyDepartment of Zoology, Cytogenetics Laboratory, Banaras Hindu University, Varanasi, India.ORCID 0000-0003-2899-3852
Banaras Hindu University · INCentral Forensic Science Laboratory · INNational Center for Disease Control · INUniversity of Bern · CHUniversity of Calcutta · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It was shown that the human Angiotensin-converting enzyme 2 (ACE2) is the receptor of recent coronavirus SARS-CoV-2, and variation in this gene may affect the susceptibility of a population. Therefore, we have analysed the sequence data of ACE2 among 393 samples worldwide, focusing on South Asia. Genetically, South Asians are more related to West Eurasian populations rather than to East Eurasians. In the present analyses of ACE2, we observed that the majority of South Asian haplotypes are closer to East Eurasians rather than to West Eurasians. The phylogenetic analysis suggested that the South Asian haplotypes shared with East Eurasians involved two unique event polymorphisms (rs4646120 and rs2285666). In contrast with the European/American populations, both of the SNPs have largely similar frequencies for East Eurasians and South Asians, Therefore, it is likely that among the South Asians, host susceptibility to the novel coronavirus SARS-CoV-2 will be more similar to that of East Eurasians rather than to that of Europeans.

Indexed as

Polymorphism, Single NucleotideAngiotensin-Converting Enzyme 2AsiaAsian PeopleBetacoronavirusCoronavirus InfectionsCOVID-19HaplotypesHuman MigrationHumansLinkage DisequilibriumPandemicsPeptidyl-Dipeptidase APhylogenyPneumonia, ViralReceptors, VirusACE2 protein, humanAngiotensin-Converting Enzyme 2Peptidyl-Dipeptidase AReceptors, Virus

Identifiers

PMID32936832
PMCPMC7494073
OpenAlexW3086922026

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.