Evidence map›Paper›PMID 32934261›Full record

ArticleScientific reports2020

Characterization of rare ABCC8 variants identified in Spanish pulmonary arterial hypertension patients.

Mauro Lago-Docampo, Jair Tenorio, Ignacio Hernández-González, Carmen Pérez-Olivares, Pilar Escribano-Subías, Guillermo Pousada, Adolfo Baloira, Miguel Arenas, Pablo Lapunzina, Diana Valverde

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Trial
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  10. Defining the clinical validity of genes reported to cause pulmonary arterial hypertension.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  11. Review
  12. Review
  13. Article
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  15. Targeting ATP-Sensitive KAmerican journal of respiratory cell and molecular biology · 2022
    Article
  16. Review
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Mauro Lago-DocampoCINBIO, Universidade de Vigo, Vigo, Spain.ORCID http://orcid.org/0000-0002-8799-6079
Jair TenorioInstituto de Genética Médica y Molecular (INGEMM), Hospital Universitario La Paz-IdiPaz, Universidad Autónoma de Madrid, Madrid, Spain.ORCID http://orcid.org/0000-0002-5308-2316
Ignacio Hernández-GonzálezServicio de Cardiología, Hospital Universitario Río Hortega, Valladolid, Spain.ORCID http://orcid.org/0000-0001-7636-9988
Carmen Pérez-OlivaresCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Instituto de Salud Carlos III, Madrid, Spain.
Pilar Escribano-SubíasCentro de Investigación Biomédica en Red de Enfermedades Cardiovasculares (CIBERCV), Instituto de Salud Carlos III, Madrid, Spain.ORCID http://orcid.org/0000-0002-6640-4839
Guillermo PousadaInstituto de Investigación Sanitaria Galicia Sur, Hospital Álvaro Cunqueiro, Vigo, Spain.ORCID http://orcid.org/0000-0002-2466-8094
Adolfo BaloiraServicio de Neumología, Complejo Hospitalario de Pontevedra, Pontevedra, Spain.
Miguel ArenasCINBIO, Universidade de Vigo, Vigo, Spain.ORCID http://orcid.org/0000-0002-0516-2717
Pablo LapunzinaInstituto de Genética Médica y Molecular (INGEMM), Hospital Universitario La Paz-IdiPaz, Universidad Autónoma de Madrid, Madrid, Spain.ORCID http://orcid.org/0000-0002-6324-4825
Diana ValverdeCINBIO, Universidade de Vigo, Vigo, Spain. dianaval@uvigo.es.ORCID http://orcid.org/0000-0002-7024-1657
Instituto de Salud Carlos III · ESHospital Universitario La Paz · ESUniversidade de Vigo · ESComplejo Hospitalario de Pontevedra · ESUniversity Hospital Complex Of Vigo · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pulmonary Arterial Hypertension (PAH) is a rare and fatal disease where knowledge about its genetic basis continues to increase. In this study, we used targeted panel sequencing in a cohort of 624 adult and pediatric patients from the Spanish PAH registry. We identified 11 rare variants in the ATP-binding Cassette subfamily C member 8 (ABCC8) gene, most of them with splicing alteration predictions. One patient also carried another variant in SMAD1 gene (c.27delinsGTAAAG). We performed an ABCC8 in vitro biochemical analyses using hybrid minigenes to confirm the correct mRNA processing of 3 missense variants (c.211C > T p.His71Tyr, c.298G > A p.Glu100Lys and c.1429G > A p.Val477Met) and the skipping of exon 27 in the novel splicing variant c.3394G > A. Finally, we used structural protein information to further assess the pathogenicity of the variants. The results showed 11 novel changes in ABCC8 and 1 in SMAD1 present in PAH patients. After in silico and in vitro biochemical analyses, we classified 2 as pathogenic (c.3288_3289del and c.3394G > A), 6 as likely pathogenic (c.211C > T, c.1429G > A, c.1643C > T, c.2422C > A, c.2694 + 1G > A, c.3976G > A and SMAD1 c.27delinsGTAAAG) and 3 as Variants of Uncertain Significance (c.298G > A, c.2176G > A and c.3238G > A). In all, we show that coupling in silico tools with in vitro biochemical studies can improve the classification of genetic variants.

Indexed as

ExonsGenetic MarkersMutation, MissenseRNA SplicingAdultFemaleHumansIncidenceMalePulmonary Arterial HypertensionSpainSulfonylurea ReceptorsYoung AdultABCC8 protein, humanGenetic MarkersSulfonylurea Receptors

Identifiers

PMID32934261
PMCPMC7492224
OpenAlexW3087648535

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.