Evidence map›Paper›PMID 32933557›Full record

ArticleEpigenetics & chromatin2020

Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark.

Marion Crespo, Lacey J Luense, Marie Arlotto, Jialei Hu, Jean Dorsey, Encar García-Oliver, Parisha P Shah, Delphine Pflieger, Shelley L Berger, Jérôme Govin

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  2. Histone modification inComputational and structural biotechnology journal · 2023
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Marion CrespoUniv. Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000, Grenoble, France.
Lacey J LuenseDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Marie ArlottoUniv. Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000, Grenoble, France.
Jialei HuDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jean DorseyDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Encar García-OliverUniv. Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000, Grenoble, France.
Parisha P ShahDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Delphine PfliegerUniv. Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000, Grenoble, France.
Shelley L BergerDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jérôme GovinUniv. Grenoble Alpes, CEA, Inserm, IRIG-BGE, 38000, Grenoble, France. Jerome.Govin@inserm.fr.ORCID 0000-0001-5511-6965
University of Pennsylvania · USCentre National de la Recherche Scientifique · FRInserm · FR

Funding

Research Project 4: Epigenetic Regulation of Retrotransposon Silencing and Male Fertility in the MouseP50HD068157 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI MARISA S. BARTOLOMEI, CHRISTOS COUTIFARIS · 2014 to 2026
$16.3M
Chromatin regulatory mechanisms in eukaryotic gametogenesisR01GM055360 · NIGMS · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 1998 to 2015
$5.1M
Epigenetic regulation of histone eviction in spermatogenesisF32HD086939 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI LUENSE, LACEY J · 2016 to 2017
$134k
Agence Nationale de la Recherche ANR-11-PDOC-0011Agence Nationale de la Recherche ANR-14-CE19-0014-02Fondation pour la Recherche Médicale SPF20140129159FP7 People: Marie-Curie Actions 304003NICHD NIH HHS F32 HD086939NICHD NIH HHS P50 HD068157NIGMS NIH HHS R01 GM055360NIH HHS HD06817
6 · The paper itself

Abstract

backgroundGametes are highly differentiated cells specialized to carry and protect the parental genetic information. During male germ cell maturation, histone proteins undergo distinct changes that result in a highly compacted chromatin organization. Technical difficulties exclude comprehensive analysis of precise histone mutations during mammalian spermatogenesis. The model organism Saccharomyces cerevisiae possesses a differentiation pathway termed sporulation which exhibits striking similarities to mammalian spermatogenesis. This study took advantage of this yeast pathway to first perform systematic mutational and proteomics screens on histones, revealing amino acid residues which are essential for the formation of spores.

methodsA systematic mutational screen has been performed on the histones H2A and H2B, generating ~ 250 mutants using two genetic backgrounds and assessing their ability to form spores. In addition, histones were purified at key stages of sporulation and post-translational modifications analyzed by mass spectrometry.

resultsThe mutation of 75 H2A H2B residues affected sporulation, many of which were localized to the nucleosome lateral surface. The use of different genetic backgrounds confirmed the importance of many of the residues, as 48% of yeast histone mutants exhibited impaired formation of spores in both genetic backgrounds. Extensive proteomic analysis identified 67 unique post-translational modifications during sporulation, 27 of which were previously unreported in yeast. Furthermore, 33 modifications are located on residues that were found to be essential for efficient sporulation in our genetic mutation screens. The quantitative analysis of these modifications revealed a massive deacetylation of all core histones during the pre-meiotic phase and a close interplay between H4 acetylation and methylation during yeast sporulation. Methylation of H2BK37 was also identified as a new histone marker of meiosis and the mouse paralog, H2BK34, was also enriched for methylation during meiosis in the testes, establishing conservation during mammalian spermatogenesis.

conclusionOur results demonstrate that a combination of genetic and proteomic approaches applied to yeast sporulation can reveal new aspects of chromatin signaling pathways during mammalian spermatogenesis.

Indexed as

Evolution, MolecularGametogenesisHistone CodeMeiosisAnimalsEpigenesis, GeneticHistonesMethylationMiceProtein Processing, Post-TranslationalProteomeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpores, FungalHistonesProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID32933557
PMCPMC7493871
OpenAlexW3087380201

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.