Evidence map›Paper›PMID 32931063›Full record

ArticleMolecular ecology2020

On the way to specificity - Microbiome reflects sponge genetic cluster primarily in highly structured populations.

Cristina Díez-Vives, Sergi Taboada, Carlos Leiva, Kathrin Busch, Ute Hentschel, Ana Riesgo

Open access · hybridAbstract read
In one paragraph

Article in Molecular ecology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Cristina Díez-VivesDepartment of Life Sciences, The Natural History Museum, London, UK.ORCID 0000-0002-1772-7092
Sergi TaboadaDepartamento de Ciencias de la Vida, EU-US Marine Biodiversity Group, Universidad de Alcalá, Alcalá de Henares, Spain.ORCID 0000-0003-1669-1152
Carlos LeivaDepartment of Life Sciences, The Natural History Museum, London, UK.ORCID 0000-0003-4398-329X
Kathrin BuschGEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine Symbioses, Kiel, Germany.
Ute HentschelGEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine Symbioses, Kiel, Germany.
Ana RiesgoDepartment of Life Sciences, The Natural History Museum, London, UK.ORCID 0000-0002-7993-1523
Natural History Museum · GBGEOMAR Helmholtz Centre for Ocean Research Kiel · DEUniversidad de Alcalá · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most animals, including sponges (Porifera), have species-specific microbiomes. Which genetic or environmental factors play major roles structuring the microbial community at the intraspecific level in sponges is, however, largely unknown. In this study, we tested whether geographic location or genetic structure of conspecific sponges influences their microbial assembly. For that, we used three sponge species with different rates of gene flow, and collected samples along their entire distribution range (two from the Mediterranean and one from the Southern Ocean) yielding a total of 393 samples. These three sponge species have been previously analysed by microsatellites or single nucleotide polymorphisms, and here we investigate their microbiomes by amplicon sequencing of the microbial 16S rRNA gene. The sponge Petrosia ficiformis, with highly isolated populations (low gene flow), showed a stronger influence of the host genetic distance on the microbial composition than the spatial distance. Host-specificity was therefore detected at the genotypic level, with individuals belonging to the same host genetic cluster harbouring more similar microbiomes than distant ones. On the contrary, the microbiome of Ircinia fasciculata and Dendrilla antarctica - both with weak population structure (high gene flow) - seemed influenced by location rather than by host genetic distance. Our results suggest that in sponge species with high population structure, the host genetic cluster influence the microbial community more than the geographic location.

Indexed as

MicrobiotaPoriferaAnimalsGene FlowGenotypeHost SpecificityPhylogenyRNA, Ribosomal, 16SRNA, Ribosomal, 16Shost-specificitymicrobiomesponges

Identifiers

PMID32931063
PMCPMC7756592
OpenAlexW3086752070

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.