Evidence map›Paper›PMID 32930712›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2020

Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers.

David S Carrell, Bradley A Malin, David J Cronkite, John S Aberdeen, Cheryl Clark, Muqun Rachel Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Informatics impact requires effective, scalable tools and standards-based infrastructure.Journal of the American Medical Informatics Association : JAMIA · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David S CarrellKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
Bradley A MalinDepartment of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA.
David J CronkiteKaiser Permanente Washington Health Research Institute, Seattle, Washington, USA.
John S AberdeenHuman Language Technology, MITRE Corporation, Bedford, Massachusetts, USA.
Cheryl ClarkHuman Language Technology, MITRE Corporation, Bedford, Massachusetts, USA.
Muqun Rachel LiPrivacy Analytics Inc, Nashville, Tennessee, USA.
Dikshya BastakotyDepartment of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA.
Steve NyembaDepartment of Biomedical Informatics, Vanderbilt University, Nashville, Tennessee, USA.
Lynette HirschmanHuman Language Technology, MITRE Corporation, Bedford, Massachusetts, USA.

Funding

Variation, Function, and Disease Supplement ProgramU01HG008657 · NHGRI · UNIVERSITY OF WASHINGTON · PI David Russell Crosslin, Gail Pairitz Jarvik · 2015 to 2026
$13.4M
Genetic Privacy and Identity in Community Settings - GetPreCiSeRM1HG009034 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI CLAYTON, ELLEN WRIGHT, MALIN, BRADLEY A. · 2016 to 2024
$8.3M
The Electronic Medical Records and Genomics (eMERGE) Network Phase III Coordinating Center (U01)U01HG008701 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PETERSON, JOSEPH F. · 2015 to 2019
$7.1M
Scalable and Robust Clinical Text De-Identification ToolsR01LM011366 · NLM · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI CARRELL, DAVID S. · 2012 to 2014
$827k
NHGRI NIH HHS RM1 HG009034NHGRI NIH HHS U01 HG008657NHGRI NIH HHS U01 HG008701NLM NIH HHS R01 LM011366
6 · The paper itself

Abstract

objectiveEffective, scalable de-identification of personally identifying information (PII) for information-rich clinical text is critical to support secondary use, but no method is 100% effective. The hiding-in-plain-sight (HIPS) approach attempts to solve this "residual PII problem." HIPS replaces PII tagged by a de-identification system with realistic but fictitious (resynthesized) content, making it harder to detect remaining unredacted PII. MATERIALS AND

methodsUsing 2000 representative clinical documents from 2 healthcare settings (4000 total), we used a novel method to generate 2 de-identified 100-document corpora (200 documents total) in which PII tagged by a typical automated machine-learned tagger was replaced by HIPS-resynthesized content. Four readers conducted aggressive reidentification attacks to isolate leaked PII: 2 readers from within the originating institution and 2 external readers.

resultsOverall, mean recall of leaked PII was 26.8% and mean precision was 37.2%. Mean recall was 9% (mean precision = 37%) for patient ages, 32% (mean precision = 26%) for dates, 25% (mean precision = 37%) for doctor names, 45% (mean precision = 55%) for organization names, and 23% (mean precision = 57%) for patient names. Recall was 32% (precision = 40%) for internal and 22% (precision =33%) for external readers. DISCUSSION AND

conclusionsApproximately 70% of leaked PII "hiding" in a corpus de-identified with HIPS resynthesis is resilient to detection by human readers in a realistic, aggressive reidentification attack scenario-more than double the rate reported in previous studies but less than the rate reported for an attack assisted by machine learning methods.

Indexed as

ConfidentialityData AnonymizationElectronic Health RecordsComputer SecurityHumansNatural Language Processingbiomedical researchconfidentialityde-identificationelectronic health recordsnatural language processingprivacy

Identifiers

PMID32930712
PMCPMC7647331

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.