Evidence map›Paper›PMID 32929285›Full record

ArticleNature genetics2020

NSD1-deposited H3K36me2 directs de novo methylation in the mouse male germline and counteracts Polycomb-associated silencing.

Kenjiro Shirane, Fumihito Miura, Takashi Ito, Matthew C Lorincz

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.

0numbers the graph read from it
0cells of the map it votes in
102citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

102 citing papers in PubMed, 150 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Gonocytes in Transition: Establishing the Male Germline Identity.Advances in experimental medicine and biology · 2026
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. The mitotic STAG3-cohesin complex shapes male germline nucleome.Nature structural & molecular biology · 2025
    Article
  16. Review
  17. Article
  18. Epigenetic networks coordinate DNA methylation across the genome.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Review
  19. Article
  20. Review

42 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Kenjiro ShiraneDepartment of Medical Genetics, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.ORCID http://orcid.org/0000-0002-8528-7404
Fumihito MiuraDepartment of Biochemistry, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0003-2656-486X
Takashi ItoDepartment of Biochemistry, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID http://orcid.org/0000-0001-6097-2803
Matthew C LorinczDepartment of Medical Genetics, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada. mlorincz@mail.ubc.ca.ORCID http://orcid.org/0000-0003-0885-0467
Kyushu University · JPUniversity of British Columbia · CA

Funding

CIHR BPF-156568CIHR PJT-153049CIHR PJT-166170
6 · The paper itself

Abstract

De novo DNA methylation (DNAme) in mammalian germ cells is dependent on DNMT3A and DNMT3L. However, oocytes and spermatozoa show distinct patterns of DNAme. In mouse oocytes, de novo DNAme requires the lysine methyltransferase (KMTase) SETD2, which deposits H3K36me3. We show here that SETD2 is dispensable for de novo DNAme in the male germline. Instead, the lysine methyltransferase NSD1, which broadly deposits H3K36me2 in euchromatic regions, plays a critical role in de novo DNAme in prospermatogonia, including at imprinted genes. However, males deficient in germline NSD1 show a more severe defect in spermatogenesis than Dnmt3l

Indexed as

AnimalsDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA Methyltransferase 3AFemaleHistone-Lysine N-MethyltransferaseHistonesHumansMaleMiceMice, KnockoutNuclear ProteinsOocytesPolycomb-Group ProteinsSpermatogenesisSpermatozoaDNA (Cytosine-5-)-MethyltransferasesDNA Methyltransferase 3ADNMT3A protein, humanDnmt3a protein, mouseDnmt3l protein, mouseHistone-Lysine N-MethyltransferaseHistonesNsd1 protein, mouseNuclear ProteinsPolycomb-Group ProteinsSETD2 protein, mouseTranscription Factors

Identifiers

PMID32929285
OpenAlexW3084552931

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.