Evidence map›Paper›PMID 32929280›Full record

ArticleNature structural & molecular biology2020

BAK core dimers bind lipids and can be bridged by them.

Angus D Cowan, Nicholas A Smith, Jarrod J Sandow, Eugene A Kapp, Yepy H Rustam, James M Murphy, Jason M Brouwer, Jonathan P Bernardini, Michael J Roy, Ahmad Z Wardak and 8 more

Abstract read
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In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. MTCH2 promotes BAX and BAK self-assembly and apoptotic pore growth.Nature structural & molecular biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Mitochondria and cell death.Nature cell biology · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Mechanisms of BCL-2 family proteins in mitochondrial apoptosis.Nature reviews. Molecular cell biology · 2023
    Review
  13. Review
  14. Article
  15. Review
  16. Article
  17. Apoptotic mitochondrial poration by a growing list of pore-forming BCL-2 family proteins.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Angus D CowanWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-9702-7319
Nicholas A SmithLa Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0001-8894-4249
Jarrod J SandowWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0001-5684-8236
Eugene A KappDepartment of Biochemistry and Molecular Biology, University of Melbourne, Parkville, Victoria, Australia.
Yepy H RustamDepartment of Biochemistry and Molecular Biology, University of Melbourne, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-1298-9034
James M MurphyWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0003-0195-3949
Jason M BrouwerWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Jonathan P BernardiniWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-5767-7624
Michael J RoyWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0003-0198-9108
Ahmad Z WardakWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Iris K TanWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Andrew I WebbWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0001-5061-6995
Jacqueline M GulbisWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0003-2091-2237
Brian J SmithLa Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0003-0498-1910
Gavin E ReidDepartment of Biochemistry and Molecular Biology, University of Melbourne, Parkville, Victoria, Australia.
Grant DewsonWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Peter M ColmanWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. pcolman@wehi.edu.au.ORCID http://orcid.org/0000-0001-8537-4041
Peter E CzabotarWalter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia. czabotar@wehi.edu.au.ORCID http://orcid.org/0000-0002-2594-496X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BAK and BAX are essential mediators of apoptosis that oligomerize in response to death cues, thereby causing permeabilization of the mitochondrial outer membrane. Their transition from quiescent monomers to pore-forming oligomers involves a well-characterized symmetric dimer intermediate. However, no essential secondary interface that can be disrupted by mutagenesis has been identified. Here we describe crystal structures of human BAK core domain (α2-α5) dimers that reveal preferred binding sites for membrane lipids and detergents. The phospholipid headgroup and one acyl chain (sn2) associate with one core dimer while the other acyl chain (sn1) associates with a neighboring core dimer, suggesting a mechanism by which lipids contribute to the oligomerization of BAK. Our data support a model in which, unlike for other pore-forming proteins whose monomers assemble into oligomers primarily through protein-protein interfaces, the membrane itself plays a role in BAK and BAX oligomerization.

Indexed as

bcl-2 Homologous Antagonist-Killer ProteinBinding SitesCrystallography, X-RayHumansMembrane LipidsMolecular Docking SimulationProtein BindingProtein MultimerizationBAK1 protein, humanbcl-2 Homologous Antagonist-Killer ProteinMembrane Lipids

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.