Evidence map›Paper›PMID 32929209›Full record

ArticleThe ISME journal2021

Frequency of mispackaging of Prochlorococcus DNA by cyanophage.

Raphaël Laurenceau, Nicolas Raho, Mathieu Forget, Aldo A Arellano, Sallie W Chisholm

Abstract read
In one paragraph

Article in The ISME journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Raphaël Laurenceau *Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. raphaellaurenceau@gmail.com.ORCID http://orcid.org/0000-0002-1326-9928
Nicolas Raho *Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.
Mathieu ForgetDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-0128-0521
Aldo A ArellanoDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-3780-1130
Sallie W ChisholmDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA. chisholm@mit.edu.ORCID http://orcid.org/0000-0003-1480-2445

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prochlorococcus cells are the numerically dominant phototrophs in the open ocean. Cyanophages that infect them are a notable fraction of the total viral population in the euphotic zone, and, as vehicles of horizontal gene transfer, appear to drive their evolution. Here we examine the propensity of three cyanophages-a podovirus, a siphovirus, and a myovirus-to mispackage host DNA in their capsids while infecting Prochlorococcus, the first step in phage-mediated horizontal gene transfer. We find the mispackaging frequencies are distinctly different among the three phages. Myoviruses mispackage host DNA at low and seemingly fixed frequencies, while podo- and siphoviruses vary in their mispackaging frequencies by orders of magnitude depending on growth light intensity. We link this difference to the concentration of intracellular reactive oxygen species and protein synthesis rates, both parameters increasing in response to higher light intensity. Based on our findings, we propose a model of mispackaging frequency determined by the imbalance between the production of capsids and the number of phage genome copies during infection: when protein synthesis rate increase to levels that the phage cannot regulate, they lead to an accumulation of empty capsids, in turn triggering more frequent host DNA mispackaging errors.

Indexed as

BacteriophagesProchlorococcusDNAGene Transfer, HorizontalGenome, ViralDNA

Identifiers

PMID32929209
PMCPMC7852597

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.