Evidence map›Paper›PMID 32929170›Full record

ArticleScientific reports2020

Histopathological imaging features- versus molecular measurements-based cancer prognosis modeling.

Sanguo Zhang, Yu Fan, Tingyan Zhong, Shuangge Ma

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sanguo ZhangSchool of Mathematics Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Yu FanSchool of Mathematics Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Tingyan ZhongSJTU-Yale Joint Center for Biostatistics, Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Shuangge MaDepartment of Biostatistics, Yale School of Public Health, New Haven, CT, 06520, USA. Shuangge.ma@yale.edu.

Funding

Yale SPORE in Lung Cancer (YSILC): The Biology and Personalized Treatment of Lung CancerP50CA196530 · NCI · YALE UNIVERSITY · PI Harriet M. Kluger · 2015 to 2026
$31.1M
Novel methods for identifying genetic interactions in cancer prognosisR01CA204120 · NCI · YALE UNIVERSITY · PI Shuangge Ma · 2016 to 2026
$3.5M
Integrated Cancer Modeling: A New DimensionR03CA241699 · NCI · YALE UNIVERSITY · PI MA, SHUANGGE · 2019 to 2020
$168k
NCI NIH HHS P50 CA196530NCI NIH HHS R01 CA204120NCI NIH HHS R03 CA241699NIH HHS CA196530NIH HHS CA204120NIH HHS CA241699
6 · The paper itself

Abstract

For lung and many other cancers, prognosis is essentially important, and extensive modeling has been carried out. Cancer is a genetic disease. In the past 2 decades, diverse molecular data (such as gene expressions and DNA mutations) have been analyzed in prognosis modeling. More recently, histopathological imaging data, which is a "byproduct" of biopsy, has been suggested as informative for prognosis. In this article, with the TCGA LUAD and LUSC data, we examine and directly compare modeling lung cancer overall survival using gene expressions versus histopathological imaging features. High-dimensional penalization methods are adopted for estimation and variable selection. Our findings include that gene expressions have slightly better prognostic performance, and that most of the gene expressions are weakly correlated imaging features. This study may provide additional insight into utilizing the two types of important data in cancer prognosis modeling and into lung cancer overall survival.

Indexed as

AgedBiomarkers, TumorComputational BiologyCytodiagnosisDiagnosis, Computer-AssistedFemaleGene Expression Regulation, NeoplasticHumansLung NeoplasmsMaleMiddle AgedPrognosisBiomarkers, Tumor

Identifiers

PMID32929170
PMCPMC7490375

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.