Evidence map›Paper›PMID 32929114›Full record

ArticleScientific reports2020

Integrative genomic analysis of salivary duct carcinoma.

Youngwook Kim, Sanghoon Song, Miran Lee, Teresa Swatloski, Joon Ho Kang, Young-Hyeh Ko, Woong-Yang Park, Han-Sin Jeong, Keunchil Park

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  7. Article
  8. Review
  9. Malignant salivary gland tumours in families with breast cancer susceptibility.Virchows Archiv : an international journal of pathology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Youngwook KimDepartment of Health Science and Technology, Samsung Advanced Institute for Health Science and Technology, Sungkyunkwan University School of Medicine, Seoul, 06351, Republic of Korea.
Sanghoon SongTheragen Bio Insitute, Suwon, 16229, Republic of Korea.
Miran LeeSamsung Biomedical Research Institute, Samsung Medical Center, Seoul, 06351, Republic of Korea.
Teresa SwatloskiBiomolecular Engineering Department, University of California, Santa Cruz, CA, 95066, USA.
Joon Ho KangDepartment of Health Science and Technology, Samsung Advanced Institute for Health Science and Technology, Sungkyunkwan University School of Medicine, Seoul, 06351, Republic of Korea.
Young-Hyeh KoDepartment of Pathology, Samsung Medical Center, Sungkuyunkwan University School of Medicine, Seoul, 06351, Republic of Korea.
Woong-Yang ParkSamsung Genome Institute, Samsung Medical Center, Seoul, 06351, Republic of Korea.
Han-Sin JeongDepartment of Otorhinolaryngology-Head and Neck Surgery, Samsung Medical Center, Sungkuyunkwan University School of Medicine, Seoul, 06351, Republic of Korea. hansin.jeong@samsung.com.
Keunchil ParkSamsung Biomedical Research Institute, Samsung Medical Center, Seoul, 06351, Republic of Korea. kpark@skku.edu.
Samsung Medical Center · KRTheragen · KRUniversity of California, Santa Cruz · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salivary duct carcinoma (SDC) is one of the most aggressive subtypes of salivary gland cancers. Conventional chemotherapy and/or radiation have shown only limited clinical efficacy in the treatment of recurrent or metastatic SDC. Currently, clinically approved targeted-therapeutics are not generally applicable except in very limited cases, and there exists a strong need for the development of treatment against this unique tumor type. To further interrogate genomic features of SDC, we have conducted multi-omic profiling of the SDC to describe the genomic alterations prevalent in this disease. Whole-genome sequencing, whole exome-sequencing and transcriptome sequencing were performed on a discovery cohort of 10 SDC samples. Targeted genomic profiling was performed in additional 32 SDC samples to support the findings obtained from the original discovery cohort. The cancer cohort was characterized by an average mutation burden of 85 somatic exonic mutations per tumor sample. The cohort harbored a mutational signature of BRCA and APOBEC/AID. Several genes, including TP53, RB1, SMAD4, HRAS, APC, PIK3CA and GNAQ were recurrently somatically altered in SDC. A novel fusion gene, generated by genomic rearrangement, MYB-NHSL1, was also noted. Our findings represent a significant layer in the systematic understanding of potentially clinically useful genomic and molecular targets for a subset of recurrent/metastatic SDC.

Indexed as

MutationAdultAgedAged, 80 and overExome SequencingFemaleGene DosageGene Expression Regulation, NeoplasticHumansMaleMiddle AgedOncogene Proteins, FusionProteinsSalivary DuctsSalivary Gland NeoplasmsWhole Genome SequencingNHSL1 protein, humanOncogene Proteins, FusionProteins

Identifiers

PMID32929114
PMCPMC7490354
OpenAlexW3085602553

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.