Evidence map›Paper›PMID 32928220›Full record

ArticleBMC veterinary research2020

Prevalence and phylogenetic analysis of hepatitis E virus in pigs in Vietnam.

Hu Suk Lee, Duy Tung Dao, Vuong Nghia Bui, Ngoc Anh Bui, Thanh Duy Le, Hung Nguyen-Viet, Delia Grace, Krishna K Thakur, Katsuro Hagiwara

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Hepatitis E Virus (HEV) Spreads from Pigs and Sheep in Mongolia.Animals : an open access journal from MDPI · 2023
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 5 countries.

Hu Suk LeeInternational Livestock Research Institute (ILRI), Regional Office for East and Southeast Asia, Room 301-302, B1 Building, Van Phuc Diplomatic Compound, 298 Kim Ma Street, Ba Dinh District, Hanoi, Vietnam. H.S.Lee@cgiar.org.ORCID http://orcid.org/0000-0002-8731-9836
Duy Tung DaoNational Institute of Veterinary Research, Hanoi, Vietnam.
Vuong Nghia BuiNational Institute of Veterinary Research, Hanoi, Vietnam.
Ngoc Anh BuiNational Institute of Veterinary Research, Hanoi, Vietnam.
Thanh Duy LeNational Institute of Veterinary Research, Hanoi, Vietnam.
Hung Nguyen-VietInternational Livestock Research Institute (ILRI), Regional Office for East and Southeast Asia, Room 301-302, B1 Building, Van Phuc Diplomatic Compound, 298 Kim Ma Street, Ba Dinh District, Hanoi, Vietnam.
Delia GraceInternational Livestock Research Institute (ILRI), Nairobi, Kenya.
Krishna K ThakurDepartment of Health Management, Atlantic Veterinary College, University of Prince Edward Island, Charlottetown, Canada.
Katsuro HagiwaraSchool of Veterinary Medicine, Rakuno Gakuen University, 582 Bunkyodai, Ebetsu, Hokkaido, 069-8501, Japan. k-hagi@rakuno.ac.jp.
National Institute of Veterinary Research · VNNatural Resources Institute · GBRakuno Gakuen University · JPUniversity of Prince Edward Island · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatitis E virus (HEV) is a zoonotic disease and has been reported around the world. The main objective of this study was to evaluate the sero-prevalence and phylogenetic analysis of HEV in Vietnam. Pig blood and fecal pooled samples were collected to assess the prevalence of HEV. We assessed the true prevalence (TP) of HEV from apparent prevalence (AP) by taking into account the sensitivity and specificity of diagnostic tests using a Bayesian approach. For phylogenetic analysis, the data compared with worldwide HEV reference strains including all eight genotypes (G1-G8) which were identified in previous study.

resultsA total of 475 sera and 250 fecal pooled samples were collected at slaughterhouses and pig farms from five provinces, in Viet Nam. Overall, the sero-AP of HEV was 58.53% (95% confidence interval: 53.95-62.70) while the sero-TP was slightly higher (65.43, 95% credible interval: 47.19-84.70). In terms of pooled samples, overall, the RNA-AP was 6.80% (95% confidence interval: 4.01-10.66). One strain in Hanoi, two strains in Dak Lak, seven strains in An Giang, four strains in Son La and two strains in Nghe An were isolated. The phylogenetic tree demonstrated that 19 Vietnamese strains were clustered into HEV 3 and 4.

conclusionsThis study provided evidence that HEV is circulating in domestic pigs in Vietnam. From a public health perspective, it is very important to raise public awareness for high-risk groups (e.g. slaughterhouse workers, pig traders, farmers and market sellers) who have more opportunities to come in contact with pig and contaminated meats.

Indexed as

AnimalsFecesFemaleHepatitis EHepatitis E virusMalePhylogenyPrevalenceSeroepidemiologic StudiesSus scrofaSwineSwine DiseasesVietnamHepatitis Ephylogenetic analysispigsprevalenceVietnam

Identifiers

PMID32928220
PMCPMC7489210
OpenAlexW3085487837

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.