Evidence map›Paper›PMID 32928105›Full record

ArticleBMC genetics2020

Pedigree analysis of pre-breeding efforts in Trifolium spp. germplasm in New Zealand.

L M Egan, R W Hofmann, P Seguin, K Ghamkhar, V Hoyos-Villegas

Open access · diamondAbstract read
In one paragraph

Article in BMC genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Perspectives on the Combined Effects ofPlants (Basel, Switzerland) · 2021
    Review
  5. Prospects forFrontiers in plant science · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

L M EganAgResearch Lincoln Research Centre, Christchurch, PB 4749, New Zealand.
R W HofmannFaculty of Agriculture and Life Sciences, Lincoln University, Lincoln, New Zealand.
P SeguinFaculty of Agricultural and Environmental Sciences, Department of Plant Science, McGill University, Montreal, Canada.
K GhamkharAgResearch Grassslands Research Centre, Palmerston North, PB 11008, New Zealand.
V Hoyos-VillegasFaculty of Agricultural and Environmental Sciences, Department of Plant Science, McGill University, Montreal, Canada. Valerio.hoyos-villegas@mcgill.ca.ORCID 0000-0003-1080-9148
Lincoln University · NZMcGill University · CAAgResearch · NZ

Funding

AgResearch Internal Funding
6 · The paper itself

Abstract

backgroundPrebreeding in plants is the activity designed to identify useful characteristics from wild germplasm and its integration in breeding programs. Prebreeding aims to introduce new variation into the populations of a species of interest. Pedigree analysis is a valuable tool for evaluation of variation in genebanks where pedigree maps are used to visualize and describe population structure and variation within these populations. Margot Forde Germplasm Centre (MFGC) is New Zealand's national forage genebank and holds a collection of ~ 75 species of the genus Trifolium, of which only a dozen have been taken through prebreeding programs. The main objective of this study was to construct pedigree maps and analyse patterns of relatedness for seven minor Trifolium species accessions contained at the MFGC. These species are Trifolium ambiguum, Trifolium arvense, Trifolium dubium, Trifolium hybridum, Trifolium medium, Trifolium subterraneum and the Trifolium repens x Trifolium occidentale interspecific hybrids. We present a history of Trifolium spp. prebreeding in New Zealand and inform breeders of possible alternative forage species to use.

resultsPedigree data from accessions introduced between 1950 and 2016 were used and filtered based on breeding activity. Kinship levels among Trifolium spp. remained below 8% and no inbreeding was found. Influential ancestors that contributed largely to populations structure were identified. The Australian cultivar 'Monaro' had a strong influence over the whole population of accessions in T. ambiguum. T. subterraneum and T. repens x T. occidentale had the largest number of generations (3). T. ambiguum and T. medium had the highest cumulative kinship across the decades.

conclusionsWe conclude that there are high levels of diversity in the seven Trifolium spp. studied. However, collection and prebreeding efforts must be strengthened to maximize utilization and bring useful genetic variation.

Indexed as

Genetics, PopulationPedigreePlant BreedingGenetic VariationGenome, PlantInbreedingNew ZealandTrifoliumAncestorsCloverGermplasmPedigreePrebreedingRelatednessTrifolium

Identifiers

PMID32928105
PMCPMC7489199
OpenAlexW3085186554

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.