Evidence map›Paper›PMID 32928101›Full record

ArticleBMC genomics2020

Genome-wide characterization and expression profiling of MAPK cascade genes in Salvia miltiorrhiza reveals the function of SmMAPK3 and SmMAPK1 in secondary metabolism.

Yongfeng Xie, Meiling Ding, Bin Zhang, Jie Yang, Tianlin Pei, Pengda Ma, Juane Dong

Abstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

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0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Gene Expression and Interaction Analysis ofPlants (Basel, Switzerland) · 2023
    Article
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  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Yongfeng XieCollege of Life Sciences, Northwest A&F University, Yangling, China.
Meiling DingCollege of Life Sciences, Northwest A&F University, Yangling, China.
Bin ZhangCollege of Life Sciences, Northwest A&F University, Yangling, China.
Jie YangCollege of Life Sciences, Northwest A&F University, Yangling, China.
Tianlin PeiShanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden, Shanghai Chenshan Plant Science Research Center, Chinese Academy of Sciences, Shanghai, China.
Pengda MaCollege of Life Sciences, Northwest A&F University, Yangling, China. mapengda@163.com.
Juane DongCollege of Life Sciences, Northwest A&F University, Yangling, China. dje009@126.com.ORCID http://orcid.org/0000-0002-0144-6982

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe contribution of mitogen-activated protein kinase (MAPK) cascades to plant growth and development has been widely studied, but this knowledge has not yet been extended to the medicinal plant Salvia miltiorrhiza, which produces a number of pharmacologically active secondary metabolites.

resultsIn this study, we performed a genome-wide survey and identified six MAPKKK kinases (MAPKKKKs), 83 MAPKK kinases (MAPKKKs), nine MAPK kinases (MAPKKs) and 18 MAPKs in the S. miltiorrhiza genome. Within each class of genes, a small number of subfamilies were recognized. A transcriptional analysis revealed differences in the genes' behaviour with respect to both their site of transcription and their inducibility by elicitors and phytohormones. Two genes were identified as strong candidates for playing roles in phytohormone signalling. A gene-to-metabolite network was constructed based on correlation analysis, highlighting the likely involvement of two of the cascades in the synthesis of two key groups of pharmacologically active secondary metabolites: phenolic acids and tanshinones.

conclusionThe data provide insight into the functional diversification and conservation of MAPK cascades in S. miltiorrhiza.

Indexed as

Secondary MetabolismAbietanesMAP Kinase Signaling SystemMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Plant ProteinsSalvia miltiorrhizaTranscriptomeAbietanesMitogen-Activated Protein Kinase 1Mitogen-Activated Protein Kinase 3Plant ProteinstanshinoneCo-expression analysisGene familyMAPK cascadesPhenolic acid synthesisSalvia miltiorrhizaTanshinone synthesis

Identifiers

PMID32928101
PMCPMC7488990

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.