Evidence map›Paper›PMID 32927009›Full record

ArticleGenomics2020

Molecular phylogeny and missense mutations at envelope proteins across coronaviruses.

Sk Sarif Hassan, Pabitra Pal Choudhury, Bidyut Roy

Open access · greenAbstract read
In one paragraph

Article in Genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors.Protein science : a publication of the Protein Society · 2021
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Sk Sarif HassanDepartment of Mathematics, Pingla Thana Mahavidyalaya, Maligram, Paschim Medinipur, 721140, West Bengal, India. Electronic address: sarimif@gmail.com.
Pabitra Pal ChoudhuryApplied Statistics Unit, Indian Statistical Institute, Kolkata 700108, West Bengal, India.
Bidyut RoyHuman Genetics Unit, Indian Statistical Institute, Kolkata 700108, West Bengal, India. Electronic address: broy@isical.ac.in.
Indian Statistical Institute · INSri Chandrasekharendra Saraswathi Viswa Mahavidyalaya · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Envelope (E) protein is one of the structural viroporins (76-109 amino acids long) present in the coronavirus. Sixteen sequentially different E-proteins were observed from a total of 4917 available complete SARS-CoV-2 genomes as on 18th June 2020 in the NCBI database. The missense mutations over the envelope protein across various coronaviruses of the β-genus were analyzed to know the immediate parental origin of the envelope protein of SARS-CoV-2. The evolutionary origin is also endorsed by the phylogenetic analysis of the envelope proteins comparing sequence homology as well as amino acid conservations.

Indexed as

Mutation, MissenseAnimalsCamelusCatsCattleChiropteraCoronavirusCoronavirus Envelope ProteinsCoronavirus InfectionsHumansPhylogenyCoronavirus Envelope Proteinsenvelope protein, SARS-CoV-2Amino acid conservationCOVID-19Envelope proteinPhylogenySARS-CoV-2Viroporin

Identifiers

PMID32927009
PMCPMC7486180
OpenAlexW3086820130

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.