Evidence map›Paper›PMID 32926352›Full record

ArticleInternational ophthalmology2021

A novel splice site mutation in the SDCCAG8 gene in an Iranian family with Bardet-Biedl syndrome.

Zahra Bahmanpour, Yousef Daneshmandpour, Somayeh Kazeminasab, Soudabeh Khalil Khalili, Elham Alehabib, Marjan Chapi, Mohsen Soosanabadi, Hossein Darvish, Babak Emamalizadeh

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Article in International ophthalmology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Zahra Bahmanpour *Molecular Medicine Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Yousef Daneshmandpour *Molecular Medicine Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Somayeh KazeminasabDepartment of Medical Genetics, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Soudabeh Khalil KhaliliDepartment of Medical Genetics, Faculty of Medicine, Tabriz University of Medical Sciences, Tabriz, Iran.
Elham AlehabibStudent Research Committee, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Marjan ChapiStudent Research Committee, Shahid Beheshti University of Medical Sciences, Tehran, Iran.
Mohsen SoosanabadiDepartment of Medical Genetics, School of Medicine, Semnan University of Medical Sciences, Semnan, Iran.
Hossein DarvishCancer Research Center, Semnan University of Medical Sciences, Semnan, Iran. Darvish_mg@yahoo.com.
Babak EmamalizadehMolecular Medicine Research Center, Tabriz University of Medical Sciences, Tabriz, Iran. Emamalizadeh_b@yahoo.com.ORCID http://orcid.org/0000-0001-5448-351X
Tabriz University of Medical Sciences · IRSemnan University of Medical Sciences · IRShahid Beheshti University of Medical Sciences · IR

Funding

Tabriz University of Medical Sciences 64764
6 · The paper itself

Abstract

purposeBardet-Biedl syndrome (BBS: OMIM 209,900) is a rare ciliopathic human genetic disorder that affects many parts of the body systems. BBS is a genetically heterogeneous disorder with a wide spectrum of clinical manifestations which makes its diagnosis and management more challenging. RetNet reports 18 genes that cause BBS and each of genes has had several known mutations. Genetic studies suggesting that serologically defined colon cancer antigen 8 (SDCCAG8) gene mutations are a major cause of BBS. MATERIALS AND

methodsIn this section, we investigated the consanguineous Iranian family members with BBS. Whole-exome sequencing and Sanger sequencing, were performed to screen and confirm the suspicious pathogenic mutations. The identified mutation was investigated using bioinformatics tools to predict the effect of the mutation on protein structure.

resultsSequential analysis identified a novel splice site mutation c.1221 + 2 T > A in the SDCCAG8 gene in BBS patients. Structure-based approaches have predicted significant structural alterations in SDCCAG8 protein.

conclusionsThis study was conducted to show the aberrant alternative splicing as one of the single splicing mutations identified can cause BBS by affecting the function of SDCCAG8 protein.

Indexed as

Bardet-Biedl SyndromeAutoantigensDNA Mutational AnalysisHumansIranMutationNeoplasm ProteinsPedigreeProtein IsoformsAutoantigensNeoplasm ProteinsProtein IsoformsSDCCAG8 protein, humanBardet–Biedl syndrome (BBS)bioinformaticsNovel mutationSDCCAG8 geneWhole-exome sequencing

Identifiers

PMID32926352
OpenAlexW3086593461

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.