Evidence map›Paper›PMID 32925784›Full record

ArticleMedicine2020

IRF1-mediated immune cell infiltration is associated with metastasis in colon adenocarcinoma.

Yao-Jian Shao, Jun-Jie Ni, Shen-Yu Wei, Xiong-Peng Weng, Meng-Die Shen, Yi-Xin Jia, Li-Na Meng

Open access · goldAbstract read
In one paragraph

Article in Medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yao-Jian ShaoFirst College of Clinical Medical, Zhejiang Chinese Medical University, Hangzhou.ORCID 0000-0002-8667-6575
Jun-Jie NiFirst College of Clinical Medical, Zhejiang Chinese Medical University, Hangzhou.
Shen-Yu WeiFirst College of Clinical Medical, Zhejiang Chinese Medical University, Hangzhou.
Xiong-Peng WengSecond College of Clinical Medical, Wenzhou Medical University, Wenzhou.
Meng-Die ShenFirst College of Clinical Medical, Zhejiang Chinese Medical University, Hangzhou.
Yi-Xin JiaFirst College of Clinical Medical, Zhejiang Chinese Medical University, Hangzhou.
Li-Na MengDepartment of Gastroenterology, the First Affiliated Hospital of Zhejiang Chinese Medical University.
Zhejiang Chinese Medical University · CNWenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEvidence suggests that metastasis is chiefly responsible for the poor prognosis of colon adenocarcinoma (COAD). The tumor microenvironment plays a vital role in regulating this biological process. However, the mechanisms involved remain unclear. The aim of this study was to identify crucial metastasis-related biomarkers in the tumor microenvironment and investigate its association with tumor-infiltrating immune cells.

methodsWe obtained gene expression profiles and clinical information from The Cancer Genome Atlas database. According to the "Estimation of STromal and Immune cells in MAlignant Tumor tissue using Expression data" algorithm, each sample generated the immune and stromal scores. Following correlation analysis, the metastasis-related gene was identified in The Cancer Genome Atlas database and validated in the GSE40967 dataset from Gene Expression Omnibus. The correlation between metastasis-related gene and infiltrating immune cells was assessed using the Tumor IMmune Estimation Resource database.

resultsThe analysis included 332 patients; the metastatic COAD samples showed a low immune score. Correlation analysis results showed that interferon regulatory factor 1 (IRF1) was associated with tumor stage, lymph node metastasis, and distant metastasis. Furthermore, significant associations between IRF1 and CD8+ T cells, T cell (general), dendritic cells, T-helper 1 cells, and T cell exhaustion were demonstrated by Spearmans correlation coefficients and P values.

conclusionsThe present findings suggest that IRF1 is associated with metastasis and the degree of immune infiltration of CD8+ T cells (general), dendritic cells, T-helper 1 cells, and T cell exhaustion in COAD. These results may provide information for immunotherapy in colon cancer.

Indexed as

AdenocarcinomaBiomarkers, TumorCD8-Positive T-LymphocytesColonic NeoplasmsDatabases, GeneticDendritic CellsGene Expression ProfilingHumansInterferon Regulatory Factor-1Kaplan-Meier EstimateLymphatic MetastasisNeoplasm StagingPrognosisT-LymphocytesTumor MicroenvironmentBiomarkers, TumorInterferon Regulatory Factor-1

Identifiers

PMID32925784
PMCPMC7489583
OpenAlexW3086615182

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.