Evidence map›Paper›PMID 32923944›Full record

ArticleBiomedical research and reviews2018

Analytical validation of a novel multi-analyte plasma test for lung nodule characterization.

Neil N Trivedi, James K Brown, Tess Rubenstein, Abigail D Rostykus, Amanda L Fish, Heng Yu, Luis Carbonell, Alice Juang, Sandy Kamer, Bhavin Patel and 6 more

Open access · diamondAbstract read
In one paragraph

Article in Biomedical research and reviews, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Trial
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Neil N TrivediSan Francisco Veterans Affairs Medical Center, USA.
James K BrownSan Francisco Veterans Affairs Medical Center, USA.
Tess RubensteinSan Francisco Veterans Affairs Medical Center, USA.
Abigail D RostykusSan Francisco Veterans Affairs Medical Center, USA.
Amanda L FishMagArray Inc, Milpitas, CA, USA.
Heng YuMagArray Inc, Milpitas, CA, USA.
Luis CarbonellMagArray Inc, Milpitas, CA, USA.
Alice JuangMagArray Inc, Milpitas, CA, USA.
Sandy KamerMagArray Inc, Milpitas, CA, USA.
Bhavin PatelMagArray Inc, Milpitas, CA, USA.
Manpreet SidhuMagArray Inc, Milpitas, CA, USA.
Doris VuongMagArray Inc, Milpitas, CA, USA.
Shan WangMagArray Inc, Milpitas, CA, USA.
Mike BeggsMagArray Inc, Milpitas, CA, USA.
Alan Hb WuUniversity of California, San Francisco, USA.
Mehrdad ArjomandiSan Francisco Veterans Affairs Medical Center, USA.
MagArray (United States) · USSan Francisco VA Medical Center · USUniversity of California, San Francisco · US

Funding

Osteopontin in Oxidative Injury and Airway Remodeling in AsthmaK23HL083099 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARJOMANDI, MEHRDAD · 2006 to 2010
$744k
NHLBI NIH HHS K23 HL083099
6 · The paper itself

Abstract

backgroundIn the National Lung Screening Trial, 96.4% of nodules had benign etiology. To avoid unnecessary actions and exposure to harm, individuals with benign disease must be identified. We describe herein the analytical validation of a multi-analyte immunoassay for characterizing the risk that a lung nodule found on CT is malignant. Those at lower risk may be considered for serial surveillance to avoid unnecessary and potentially harmful procedures. While those nodules characterized at higher risk may be appropriate for more aggressive actions.

objectiveTo validate the analytical performance of multiplexed plasma protein assays used in a novel test for lung nodule characterization.

methodsA multiplexed immunoassay panel for the measurement of plasma proteins in current smokers who present with a lung nodule on CT scan was evaluated in a clinical testing laboratory. Assay analytical sensitivity, reproducibility, precision, and recovery of Epidermal Growth Factor Receptor (EGFR), Prosurfactant protein B (ProSB), and Tissue Inhibitor of Metalloproteinases 1 (TIMP1) from human EDTA plasma samples were evaluated across multiple runs, lots, and technicians. Interfering substances and sample pre-analytical storage conditions were evaluated for their effect on analyte recovery. The lung nodule risk score reproducibility was assessed across multiple lots.

resultsThe assay sensitivities were 0.10 ng/mL EGFR, 0.02 ng/mL ProSB, and 0.29 ng/mL TIMP1 with over three orders of magnitude in the assay dynamic ranges. The assays and analytes are robust to pre-analytical sample handling and the plasma can be stored for up to 4 days at 4°C either when freshy collected or thawed after long-term storage at -80°C. Total imprecision after 20 days of testing remained under 9% for all three assays. Risk score variability remained within a ± 10% risk score range.

conclusionsThe three protein assays comprising the multi-analyte plasma test for lung nodule characterization performed quite acceptably in a clinical laboratory.

Indexed as

biomarkersdiagnosislung cancerpulmonary nodulesrisk models

Identifiers

PMID32923944
PMCPMC7486005
OpenAlexW2906336144

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.