Evidence map›Paper›PMID 32920195›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2020

The role of animals as a source of antimicrobial resistant nontyphoidal Salmonella causing invasive and non-invasive human disease in Vietnam.

Andrea Parisi, Tu Le Thi Phuong, Alison E Mather, Thibaut Jombart, Ha Thanh Tuyen, Nguyen Phu Huong Lan, Nguyen Hoang Thu Trang, Juan Carrique-Mas, James I Campbell, Nguyen Vinh Trung and 3 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Antibiotic and colistin resistance pattern ofNew microbes and new infections · 2025
    Article
  5. Article
  6. Non-typhoidalJAC-antimicrobial resistance · 2024
    Review
  7. A review and meta-analysis of non-typhoidalOne health (Amsterdam, Netherlands) · 2024
    Review
  8. Article
  9. Article
  10. Speaking the host language: howMicrobiology (Reading, England) · 2023
    Review
  11. Review
  12. Clinical profiles and antimicrobial resistance patterns of invasive Salmonella infections in children in China.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2022
    Article
  13. Analysis of Antimicrobial Resistance in Non-typhoidalFrontiers in veterinary science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 3 countries.

Andrea ParisiResearch School of Population Health, Australian National University, Australia.
Tu Le Thi PhuongThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Alison E MatherQuadram Institute Bioscience, Norwich, United Kingdom.
Thibaut JombartThe London School of Hygiene and Tropical Medicine, London, United Kingdom.
Ha Thanh TuyenThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Nguyen Phu Huong LanThe Hospital for Tropical Diseases, Ho Chi Minh City, Viet Nam.
Nguyen Hoang Thu TrangThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Juan Carrique-MasThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, Oxford University, Oxford, United Kingdom.
James I CampbellThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam; Centre for Tropical Medicine and Global Health, Nuffield Department of Clinical Medicine, Oxford University, Oxford, United Kingdom.
Nguyen Vinh TrungThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Viet Nam.
Kathryn GlassResearch School of Population Health, Australian National University, Australia.
Martyn D KirkResearch School of Population Health, Australian National University, Australia.
Stephen BakerCambridge Institute of Therapeutic Immunology & Infectious Disease (CITIID), Cambridge Biomedical Campus, University of Cambridge, Cambridge, United Kingdom. Electronic address: sgb47@medschl.cam.ac.uk.
Oxford University Clinical Research Unit · VNAustralian National University · AUNuffield Orthopaedic Centre · GBHospital for Tropical Diseases · VNLondon School of Hygiene & Tropical Medicine · GBQuadram Institute · GBUniversity of Cambridge · GB

Funding

Medical Research Council MR/R015600/1Wellcome Trust 110085/Z/15/ZWellcome Trust 215515/Z/19/Z
6 · The paper itself

Abstract

backgroundNontyphoidal Salmonella (NTS) are associated with both diarrhea and bacteremia. Antimicrobial resistance (AMR) is common in NTS in low-middle income countries, but the major source(s) of AMR NTS in humans are not known. Here, we aimed to assess the role of animals as a source of AMR in human NTS infections in Vietnam. We retrospectively combined and analyzed 672 NTS human and animal isolates from four studies in southern Vietnam and compared serovars, sequence types (ST), and AMR profiles. We generated a population structure of circulating organisms and aimed to attribute sources of AMR in NTS causing invasive and noninvasive disease in humans using Bayesian multinomial mixture models.

resultsAmong 672 NTS isolates, 148 (22%) originated from human blood, 211 (31%) from human stool, and 313 (47%) from animal stool. The distribution of serovars, STs, and AMR profiles differed among sources; serovars Enteritidis, Typhimurium, and Weltevreden were the most common in human blood, human stool, and animals, respectively. We identified an association between the source of NTS and AMR profile; the majority of AMR isolates were isolated from human blood (p < 0.001). Modelling by ST-AMR profile found chickens and pigs were likely the major sources of AMR NTS in human blood and stool, respectively; but unsampled sources were found to be a major contributor.

conclusionsAntimicrobial use in food animals is hypothesized to play role in the emergence of AMR in human pathogens. Our cross-sectional population-based approach suggests a significant overlap between AMR in NTS in animals and humans, but animal NTS does explain the full extent of AMR in human NTS infections in Vietnam.

Indexed as

Disease VectorsSerogroupAnimalsAnti-Bacterial AgentsBacterial ZoonosesChickensCross-Sectional StudiesDisease Transmission, InfectiousDrug Resistance, BacterialDucksGenetic VariationMicrobial Sensitivity TestsRetrospective StudiesRodentiaSalmonella InfectionsSalmonella typhimuriumAnti-Bacterial AgentsAntimicrobial resistanceBacteremiaDiarrheaNontyphoidal SalmonellaZoonosis

Identifiers

PMID32920195
PMCPMC7705210
OpenAlexW3086467084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.