Evidence map›Paper›PMID 32918630›Full record

ArticleJournal of cancer research and clinical oncology2021

Panel of potential lncRNA biomarkers can distinguish various types of liver malignant and benign tumors.

Olga Y Burenina, Natalia L Lazarevich, Inna F Kustova, Daria A Shavochkina, Ekaterina A Moroz, Nikolay E Kudashkin, Yuriy I Patyutko, Alexey V Metelin, Eduard F Kim, Dmitry A Skvortsov and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Olga Y BureninaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Moscow, Russia, 143026. o.burenina@skoltech.ru.ORCID http://orcid.org/0000-0002-5653-1105
Natalia L LazarevichInstitute of Carcinogenesis, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Inna F KustovaInstitute of Carcinogenesis, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Daria A ShavochkinaInstitute of Carcinogenesis, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Ekaterina A MorozInstitute of Clinical Oncology, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Nikolay E KudashkinInstitute of Clinical Oncology, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Yuriy I PatyutkoInstitute of Clinical Oncology, FSBI "N.N. Blokhin National Medical Research Center of Oncology" of the Ministry of Health of the Russian Federation, Moscow, Russia, 115478.
Alexey V MetelinPetrovsky National Research Centre of Surgery, Moscow, Russia, 119991.
Eduard F KimPetrovsky National Research Centre of Surgery, Moscow, Russia, 119991.
Dmitry A SkvortsovLomonosov Moscow State University, Chemistry Department and A.N. Belozersky Institute of Physico-Chemical Biology, Moscow, Russia, 119992.
Timofei S ZatsepinCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Moscow, Russia, 143026.
Maria P RubtsovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Moscow, Russia, 143026.
Olga A DontsovaCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, Moscow, Russia, 143026.
Ministry of Health · ESSkolkovo Institute of Science and Technology · RURussian Scientific Center of Surgery · RULomonosov Moscow State University · RUNational Research University Higher School of Economics · RU

Funding

Russian Science Foundation 18-74-00120
6 · The paper itself

Abstract

purposeLiver cancers are among the deadliest malignancies due to a limited efficacy of early diagnostics, the lack of appropriate biomarkers and insufficient discrimination of different types of tumors by classic and molecular methods. In this study, we searched for novel long non-coding RNA (lncRNA) as well as validated several known candidates suitable as probable biomarkers for primary liver tumors of various etiology.

methodsWe described a novel lncRNA HELIS (aka "HEalthy LIver Specific") and estimated its expression by RT-qPCR in 82 paired tissue samples from patients with hepatocellular carcinoma (HCC), cholangiocarcinoma (CCA), combined HCC-CCA, pediatric hepatoblastoma (HBL) and non-malignant hepatocellular adenoma (HCA) and focal nodular hyperplasia (FNH). Additionally, we examined expression of cancer-associated lncRNAs HULC, MALAT1, UCA1, CYTOR, LINC01093 and H19, which were previously studied mainly in HCC.

resultsWe demonstrated that down-regulation of HELIS strongly correlates with carcinogenesis; whereas in tumors with non-hepatocyte origin (HBL, CCA) or in a number of poorly differentiated HCC, this lncRNA is not expressed. We showed that recently discovered LINC01093 is dramatically down-regulated in all malignant liver cancers; while in benign tumors LINC01093 expression is just twice decreased in comparison to adjacent samples.

conclusionOur study revealed that among all measured biomarkers only down-regulated HELIS and LINC01093, up-regulated CYTOR and dysregulated HULC are perspective for differential diagnostics of liver cancers; whereas others demonstrated discordant results and cannot be considered as potential universal biomarkers for this purpose.

Indexed as

Gene Expression Regulation, NeoplasticBile Duct NeoplasmsBiomarkers, TumorCase-Control StudiesCholangiocarcinomaDiagnosis, DifferentialFemaleFollow-Up StudiesHepatoblastomaHumansLiver NeoplasmsMaleMiddle AgedPrognosisRNA, Long NoncodingBiomarkers, TumorH19 long non-coding RNAHULC long non-coding RNA, humanMALAT1 long non-coding RNA, humanRNA, Long NoncodingUCA1 RNA, humanBiomarkersCholangiocarcinomaHepatoblastomaHepatocellular carcinomaLiver cancerLncRNA

Identifiers

PMID32918630
PMCPMC11802012
OpenAlexW3085394979

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.