Evidence map›Paper›PMID 32918097›Full record

ArticleArchives of microbiology2021

Genomic analysis of facultatively oligotrophic haloarchaea of the genera Halarchaeum, Halorubrum, and Halolamina, isolated from solar salt.

Changsu Lee, Hye Seon Song, Se Hee Lee, Joon Yong Kim, Jin-Kyu Rhee, Seong Woon Roh

Abstract read
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Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Changsu Lee *Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Hye Seon Song *Microbiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Se Hee LeeMicrobiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Joon Yong KimMicrobiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea.
Jin-Kyu RheeDepartment of Food Science and Engineering, Ewha Woman's University, Seoul, 03760, Republic of Korea. jkrhee@ewha.ac.kr.
Seong Woon RohMicrobiology and Functionality Research Group, World Institute of Kimchi, Gwangju, 61755, Republic of Korea. swroh@wikim.re.kr.ORCID http://orcid.org/0000-0003-0609-6130

Funding

National Research Foundation of Korea 2018R1D1A1A09082921National Research Foundation of Korea 2018R1D1A1B07045349World Institute of Kimchi KE2001-2
6 · The paper itself

Abstract

Extremely halophilic archaea (haloarchaea) belonging to the phylum Euryarchaeota have been found in high-salinity environments. In this study, Halarchaeum sp. CBA1220, Halorubrum sp. CBA1229, and Halolamina sp. CBA1230, which are facultatively oligotrophic haloarchaea, were isolated from solar salt by culture under oligotrophic culture conditions. The complete genomes of strains CBA1220, CBA1229, and CBA1230 were sequenced and were found to contain 3,175,875, 3,582,278, and 3,465,332 bp, with a G + C content of 68.25, 67.66, and 66.75 mol %, respectively. In total, 60, 36, and 33 carbohydrate-active enzyme genes were determined in the respective strains. The strains harbored various genes encoding stress-tolerance proteins, including universal stress proteins, cold-shock proteins, and rubrerythrin and rubrerythrin-related proteins. The genome data produced in this study will facilitate further research to improve our understanding of other halophilic strains and promote their industrial application.

Indexed as

Base CompositionEuryarchaeotaGenome, ArchaealGenomicsHalobacteriaceaeHalorubrumSalinityStress, PhysiologicalFacultatively oligotrophic haloarchaeaGenome sequenceHalarchaeumHalolaminaHalorubrumSolar salt

Identifiers

PMID32918097

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.