Evidence map›Paper›PMID 32917957›Full record

ArticleScientific reports2020

Gene expression is stable in a complete CIB1 knockout keratinocyte model.

Elias Imahorn, Magomet Aushev, Stefan Herms, Per Hoffmann, Sven Cichon, Julia Reichelt, Peter H Itin, Bettina Burger

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Deficiency inJournal of virology · 2024
    Article
  2. CRISPR-Cas9‒Based Genomic Engineering in Keratinocytes: From Technology to Application.JID innovations : skin science from molecules to population health · 2022
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Elias ImahornDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0001-7769-1784
Magomet AushevWellcome Centre for Mitochondrial Research, Institute of Genetic Medicine, Newcastle upon Tyne, UK.ORCID http://orcid.org/0000-0002-1348-6404
Stefan HermsDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-2786-8200
Per HoffmannDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-6573-983X
Sven CichonDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-9475-086X
Julia ReicheltDepartment of Dermatology, Venereology and Allergology, Medical University Innsbruck, Innsbruck, Austria.ORCID http://orcid.org/0000-0002-4358-7011
Peter H ItinDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-7522-002X
Bettina BurgerDepartment of Biomedicine, University of Basel and University Hospital Basel, Basel, Switzerland. bettina.burger@usb.ch.ORCID http://orcid.org/0000-0002-7686-0176
University of Basel · CHForschungszentrum Jülich · DEInnsbruck Medical University · ATWellcome Centre for Mitochondrial Research · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epidermodysplasia verruciformis (EV) is a genodermatosis characterized by the inability of keratinocytes to control cutaneous β-HPV infection and a high risk for non-melanoma skin cancer (NMSC). Bi-allelic loss of function variants in TMC6, TMC8, and CIB1 predispose to EV. The correlation between these proteins and β-HPV infection is unclear. Its elucidation will advance the understanding of HPV control in human keratinocytes and development of NMSC. We generated a cell culture model by CRISPR/Cas9-mediated deletion of CIB1 to study the function of CIB1 in keratinocytes. Nine CIB1 knockout and nine mock control clones were generated originating from a human keratinocyte line. We observed small changes in gene expression as a result of CIB1 knockout, which is consistent with the clearly defined phenotype of EV patients. This suggests that the function of human CIB1 in keratinocytes is limited and involves the restriction of β-HPV. The presented model is useful to investigate CIB1 interaction with β-HPV in future studies.

Indexed as

Epidermodysplasia VerruciformisGene Expression RegulationModels, BiologicalCalcium-Binding ProteinsCell LineGene Knockout TechniquesHumansKeratinocytesCalcium-Binding ProteinsCIB1 protein, human

Identifiers

PMID32917957
PMCPMC7486891
OpenAlexW3086273742

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.