Evidence map›Paper›PMID 32917864›Full record

ArticleNature communications2020

Allosteric coupling between α-rings of the 20S proteasome.

Zanlin Yu, Yadong Yu, Feng Wang, Alexander G Myasnikov, Philip Coffino, Yifan Cheng

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Stability of 20S Proteasome Configurations: Preopening the Axial Gate.The journal of physical chemistry letters · 2023
    Article
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  10. Article
  11. Review
  12. Article
  13. Article
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  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Zanlin YuDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA.ORCID http://orcid.org/0000-0001-8381-8788
Yadong YuDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA.
Feng WangDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA.
Alexander G MyasnikovDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA.
Philip CoffinoLaboratory of Cellular Biophysics, Rockefeller University, New York, NY, 10065, USA. pcoffino@mail.rockefeller.edu.
Yifan ChengDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA, 94158, USA. yifan.cheng@ucsf.edu.ORCID http://orcid.org/0000-0001-9535-0369
University of California, San Francisco · USHoward Hughes Medical Institute · USRockefeller University · USSt. Jude Children's Research Hospital · US

Funding

Mechanism of gate-opening in the 20S proteasome induced by the proteasomal ATPaseR01GM082893 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2008 to 2017
$2.8M
Acquisition of an electron microscope for high-resolution single particle cryo-EMS10OD021741 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2016 to 2016
$2.0M
Structure of functionally important dynamic states of the proteasomeR01GM107124 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COFFINO, PHILIP · 2014 to 2017
$1.8M
Linux cluster for near atomic resolution single particle cryo-EMS10OD020054 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, YIFAN · 2015 to 2015
$456k
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM082893NIGMS NIH HHS R01 GM107124NIH HHS S10 OD020054NIH HHS S10 OD021741
6 · The paper itself

Abstract

Proteasomal machinery performs essential regulated protein degradation in eukaryotes. Classic proteasomes are symmetric, with a regulatory ATPase docked at each end of the cylindrical 20S. Asymmetric complexes are also present in cells, either with a single ATPase or with an ATPase and non-ATPase at two opposite ends. The mechanism that populates these different proteasomal complexes is unknown. Using archaea homologs, we construct asymmetric forms of proteasomes. We demonstrate that the gate conformation of the two opposite ends of 20S are coupled: binding one ATPase opens a gate locally, and also opens the opposite gate allosterically. Such allosteric coupling leads to cooperative binding of proteasomal ATPases to 20S and promotes formation of proteasomes symmetrically configured with two identical ATPases. It may also promote formation of asymmetric complexes with an ATPase and a non-ATPase at opposite ends. We propose that in eukaryotes a similar mechanism regulates the composition of the proteasomal population.

Indexed as

Adenosine TriphosphatasesArchaeaCryoelectron MicroscopyKineticsModels, MolecularProteasome Endopeptidase ComplexProtein ConformationThermoplasmaAdenosine TriphosphatasesProteasome Endopeptidase Complex

Identifiers

PMID32917864
PMCPMC7486400
OpenAlexW3086110141

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.