Evidence map›Paper›PMID 32917811›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Proline-rich domain of human ALIX contains multiple TSG101-UEV interaction sites and forms phosphorylation-mediated reversible amyloids.

Ruben D Elias, Wen Ma, Rodolfo Ghirlando, Charles D Schwieters, Vijay S Reddy, Lalit Deshmukh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

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  16. NMR illuminates intrinsic disorder.Current opinion in structural biology · 2021
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  20. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ruben D EliasDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-6702-052X
Wen MaDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-1123-5273
Rodolfo GhirlandoLaboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892.ORCID 0000-0003-4880-4959
Charles D SchwietersDivision of Computational Biosciences, Center for Information Technology, National Institutes of Health, Bethesda, MD 20892.ORCID 0000-0002-4216-4658
Vijay S ReddyDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.ORCID 0000-0003-4638-8277
Lalit DeshmukhDepartment of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA 92093; ldeshmukh@ucsd.edu.ORCID 0000-0001-6126-1560
University of California San Diego · USNational Institutes of Health · USScripps Research Institute · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
X-ray Crystallographic Fragment Screening CoreU54AI150472 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI SARAFIANOS, STEFAN G, TORBETT, BRUCE EDWARD · 2019 to 2021
$15.7M
Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2019 to 2021
$14.9M
THEORY OF BIOMOLECULAR DIFFUSIONR01GM031749 · NIGMS · UNIVERSITY OF HOUSTON · PI HUBER, GARY ALEXANDER, MCCAMMON, JAMES ANDREW · 1985 to 2022
$7.8M
NIAID NIH HHS P30 AI036214NIAID NIH HHS P50 AI150464NIAID NIH HHS U54 AI150472NIGMS NIH HHS R01 GM031749
6 · The paper itself

Abstract

Proline-rich domains (PRDs) are among the most prevalent signaling modules of eukaryotes but often unexplored by biophysical techniques as their heterologous recombinant expression poses significant difficulties. Using a "divide-and-conquer" approach, we present a detailed investigation of a PRD (166 residues; ∼30% prolines) belonging to a human protein ALIX, a versatile adaptor protein involved in essential cellular processes including ESCRT-mediated membrane remodeling, cell adhesion, and apoptosis. In solution, the N-terminal fragment of ALIX-PRD is dynamically disordered. It contains three tandem sequentially similar proline-rich motifs that compete for a single binding site on its signaling partner, TSG101-UEV, as evidenced by heteronuclear NMR spectroscopy. Global fitting of relaxation dispersion data, measured as a function of TSG101-UEV concentration, allowed precise quantitation of these interactions. In contrast to the soluble N-terminal portion, the C-terminal tyrosine-rich fragment of ALIX-PRD forms amyloid fibrils and viscous gels validated using dye-binding assays with amyloid-specific probes, congo red and thioflavin T (ThT), and visualized by transmission electron microscopy. Remarkably, fibrils dissolve at low temperatures (2 to 6 °C) or upon hyperphosphorylation with Src kinase. Aggregation kinetics monitored by ThT fluorescence shows that charge repulsion dictates phosphorylation-mediated fibril dissolution and that the hydrophobic effect drives fibril formation. These data illuminate the mechanistic interplay between interactions of ALIX-PRD with TSG101-UEV and polymerization of ALIX-PRD and its central role in regulating ALIX function. This study also demonstrates the broad functional repertoires of PRDs and uncovers the impact of posttranslational modifications in the modulation of reversible amyloids.

Indexed as

Amino Acid MotifsAmyloidBinding SitesCalcium-Binding ProteinsCell Cycle ProteinsDNA-Binding ProteinsEndosomal Sorting Complexes Required for TransportHumansPhosphorylationProlineProtein BindingProtein DomainsTranscription FactorsTsg101 ProteinAmyloidCalcium-Binding ProteinsCell Cycle ProteinsDNA-Binding ProteinsEndosomal Sorting Complexes Required for TransportPDCD6IP protein, humanProlineTranscription FactorsTsg101 Proteinamyloidsintrinsically disordered proteinNMRposttranslational modificationssignal transduction

Identifiers

PMID32917811
PMCPMC7533887
OpenAlexW3084880686

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.