Evidence map›Paper›PMID 32916923›Full record

ArticleInternational journal of molecular sciences2020

Real-Time Visualization of Cellulase Activity by Microorganisms on Surface.

Pallavi Kumari, Tali Sayas, Patricia Bucki, Sigal Brown-Miyara, Maya Kleiman

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Pallavi KumariInstitute of Plant Sciences, Agricultural Research Organization (Volcani Center), Rishon Lezion 7505101, Israel.
Tali SayasInstitute of Plant Sciences, Agricultural Research Organization (Volcani Center), Rishon Lezion 7505101, Israel.
Patricia BuckiInstitute of Plant Protection, Agricultural Research Organization (Volcani Center), Rishon Lezion 7505101, Israel.
Sigal Brown-MiyaraInstitute of Plant Protection, Agricultural Research Organization (Volcani Center), Rishon Lezion 7505101, Israel.
Maya KleimanInstitute of Plant Sciences, Agricultural Research Organization (Volcani Center), Rishon Lezion 7505101, Israel.ORCID 0000-0003-2302-4892
Agricultural Research Organization · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A variety of methods to detect cellulase secretion by microorganisms has been developed over the years, none of which enables the real-time visualization of cellulase activity on a surface. This visualization is critical to study the interaction between soil-borne cellulase-secreting microorganisms and the surface of plant roots and specifically, the effect of surface features on this interaction. Here, we modified the known carboxymethyl cellulase (CMC) hydrolysis visualization method to enable the real-time tracking of cellulase activity of microorganisms on a surface. A surface was formed using pure CMC with acridine orange dye incorporated in it. The dye disassociated from the film when hydrolysis occurred, forming a halo surrounding the point of hydrolysis. This enabled real-time visualization, since the common need for post hydrolysis dyeing was negated. Using root-knot nematode (RKN) as a model organism that penetrates plant roots, we showed that it was possible to follow microorganism cellulase secretion on the surface. Furthermore, the addition of natural additives was also shown to be an option and resulted in an increased RKN response. This method will be implemented in the future, investigating different microorganisms on a root surface microstructure replica, which can open a new avenue of research in the field of plant root-microorganism interactions.

Indexed as

Acridine OrangeSoil MicrobiologyAnimalsCarboxymethylcellulose SodiumCellulaseHydrolysisPlant RootsTylenchoideaAcridine OrangeCarboxymethylcellulose SodiumCellulasehydrolysismicroorganismsplant rootreal-timevisualization

Identifiers

PMID32916923
PMCPMC7555966
OpenAlexW3083864054

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.