Evidence map›Paper›PMID 32916905›Full record

ArticleMarine drugs2020

Characterization of the CAZy Repertoire from the Marine-Derived Fungus

Wissal Ben Ali, David Navarro, Abhishek Kumar, Elodie Drula, Annick Turbé-Doan, Lydie Oliveira Correia, Stéphanie Baumberger, Emmanuel Bertrand, Craig B Faulds, Bernard Henrissat and 3 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in Marine drugs, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Proteogenomics for Non-model Ocean-Derived Fungi.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
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  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Wissal Ben AliBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.ORCID 0000-0003-0865-2102
David NavarroBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Abhishek KumarInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.ORCID 0000-0003-4172-4059
Elodie DrulaBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Annick Turbé-DoanBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Lydie Oliveira CorreiaAgroParisTech, Micalis Institute, PAPPSO, Université Paris-Saclay, INRAE, 78350 Jouy-en-Josas, France.
Stéphanie BaumbergerInstitut Jean-Pierre Bourgin, INRAE, AgroParisTech, CNRS, Université Paris-Saclay, 78000 Versailles, France.
Emmanuel BertrandBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Craig B FauldsBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques, Centre National de la Recherche Scientifique, Aix-Marseille Université, 13288 Marseille, France.
Giuliano SciaraBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.
Tahar MechichiLaboratoire de Biochimie et de Génie Enzymatique des Lipases, Ecole Nationale d'Ingénieurs de Sfax, Université de Sfax, Sfax 3029, Tunisia.
Eric RecordBiodiversité et Biotechnologie Fongiques, Aix-Marseille Université, INRAE, UMR1163, 13288 Marseille, France.ORCID 0000-0002-7545-9997
Aix-Marseille Université · FRUniversity of Sfax · TNAgroParisTech · FRCentre National de la Recherche Scientifique · FRKing Abdulaziz University · SAManipal Academy of Higher Education · IN

Funding

PHC-Utique 39274UH 2018-2020, 18G0817Ramalingaswami Re-Retry Faculty Fellowship BT/RLF/Re-entry/38/2017
6 · The paper itself

Abstract

Even if the ocean represents a large part of Earth's surface, only a few studies describe marine-derived fungi compared to their terrestrial homologues. In this ecosystem, marine-derived fungi have had to adapt to the salinity and to the plant biomass composition. This articles studies the growth of five marine isolates and the tuning of lignocellulolytic activities under different conditions, including the salinity. A de novo transcriptome sequencing and assembly were used in combination with a proteomic approach to characterize the Carbohydrate Active Enzymes (CAZy) repertoire of one of these strains. Following these approaches,

Indexed as

Salt ToleranceAscomycotaDatabases, GeneticEnzymesFungal ProteinsGene Expression ProfilingLigninProteomeProteomicsSalinitySeawaterSubstrate SpecificityTranscriptomeWater MicrobiologyEnzymesFungal ProteinsLigninlignocelluloseProteomelignocellulose-degrading enzymesmarine-derived fungussaline adaptationsecretomeStemphylium lucomagnoense

Identifiers

PMID32916905
PMCPMC7551824
OpenAlexW3084419402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.