Evidence map›Paper›PMID 32915968›Full record

ArticleJournal of experimental botany2020

A CYC/TB1-type TCP transcription factor controls spikelet meristem identity in barley.

Yi Shang, Lu Yuan, Zhaocan Di, Yong Jia, Zhenlan Zhang, Sujuan Li, Liping Xing, Zengjun Qi, Xiaoyun Wang, Jinghuan Zhu and 5 more

Abstract read
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In one paragraph

Article in Journal of experimental botany, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

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  7. Genome-Wide Identification and Analysis ofPlants (Basel, Switzerland) · 2023
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  9. Characterization of a barley (Frontiers in plant science · 2023
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  14. Recruitment of an ancient branching program to suppress carpel development in maize flowers.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  17. Comprehensive evolutionary analysis of theFrontiers in plant science · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Yi ShangHybrid Rapeseed Research Center of Shaanxi Province, Yangling, China.
Lu YuanNational Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/ JCIC-MCP, Nanjing, Jiangsu, China.
Zhaocan DiNational Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/ JCIC-MCP, Nanjing, Jiangsu, China.
Yong JiaWestern Barley Genetics Alliance, Murdoch University, Murdoch WA, Australia.
Zhenlan ZhangHybrid Rapeseed Research Center of Shaanxi Province, Yangling, China.
Sujuan LiCentral Laboratory of Zhejiang Academy of Agricultural Science, Hangzhou, China.
Liping XingNational Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/ JCIC-MCP, Nanjing, Jiangsu, China.
Zengjun QiNational Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/ JCIC-MCP, Nanjing, Jiangsu, China.
Xiaoyun WangJiangxi University of Traditional Chinese Medicine, Nanchang, China.
Jinghuan ZhuInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Science, Hangzhou, China.
Wei HuaInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Science, Hangzhou, China.
Xiaojian WuInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Science, Hangzhou, China.
Minqiu ZhuNational Key Laboratory of Crop Genetics and Germplasm Enhancement, Cytogenetics Institute, Nanjing Agricultural University/ JCIC-MCP, Nanjing, Jiangsu, China.
Gang LiWheat Research Institute, School of Life Sciences and Engineering, Southwest University of Science and Technology, Mianyang, Sichuan, China.
Chengdao LiWestern Barley Genetics Alliance, Murdoch University, Murdoch WA, Australia.
Nanjing Agricultural University · CNZheJiang Academy of Agricultural Sciences · CNMurdoch University · AUHybrid Rapeseed Research Center of Shaanxi Province · CNJiangxi University of Traditional Chinese Medicine · CNSouthwest University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Barley possesses a branchless, spike-shaped inflorescence where determinate spikelets attach directly to the main axis, but the developmental mechanism of spikelet identity remains largely unknown. Here we report the functional analysis of the barley gene BRANCHED AND INDETERMINATE SPIKELET 1 (BDI1), which encodes a TCP transcription factor and plays a crucial role in determining barley inflorescence architecture and spikelet development. The bdi1 mutant exhibited indeterminate spikelet meristems that continued to grow and differentiate after producing a floret meristem; some spikelet meristems at the base of the spike formed two fully developed seeds or converted to branched spikelets, producing a branched inflorescence. Map-based cloning analysis showed that this mutant has a deletion of ~600 kb on chromosome 5H containing three putative genes. Expression analysis and virus-induced gene silencing confirmed that the causative gene, BDI1, encodes a CYC/TB1-type TCP transcription factor and is highly conserved in both wild and cultivated barley. Transcriptome and regulatory network analysis demonstrated that BDI1 may integrate regulation of gene transcription cell wall modification and known trehalose-6-phosphate homeostasis to control spikelet development. Together, our findings reveal that BDI1 represents a key regulator of inflorescence architecture and meristem determinacy in cereal crop plants.

Indexed as

HordeumMeristemGene Expression Regulation, PlantMutationPlant ProteinsTranscription FactorsPlant ProteinsTranscription FactorsBarleyBRANCHED AND INDETERMINATE SPIKELET 1 (BDI1)deletiondeterminacyinflorescence architecturemap-based cloningspikelet meristemTCP transcription factortranscriptome sequencing (RNA-Seq)virus-induced gene silencing (VIGS)

Identifiers

PMID32915968
OpenAlexW3086219186

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.