Evidence map›Paper›PMID 32914844›Full record

ArticleMutagenesis2020

DNA ligase I variants fail in the ligation of mutagenic repair intermediates with mismatches and oxidative DNA damage.

Qun Tang, Pradnya Kamble, Melike Çağlayan

Open access · greenAbstract read
In one paragraph

Article in Mutagenesis, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Fidelity of DNA ligase I is sensitive to physiological MgThe Journal of biological chemistry · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Qun TangDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.
Pradnya KambleDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.
Melike ÇağlayanDepartment of Biochemistry and Molecular Biology, University of Florida, Gainesville, FL, USA.
University of Florida · US

Funding

Oxidant and environmental toxicant-induced effects compromise ligation in DNA repairR00ES026191 · NIEHS · UNIVERSITY OF FLORIDA · PI CAGLAYAN, MELIKE · 2018 to 2020
$730k
NIEHS NIH HHS R00 ES026191
6 · The paper itself

Abstract

DNA ligase I (LIG1) joins DNA strand breaks during DNA replication and repair transactions and contributes to genome integrity. The mutations (P529L, E566K, R641L and R771W) in LIG1 gene are described in patients with LIG1-deficiency syndrome that exhibit immunodeficiency. LIG1 senses 3'-DNA ends with a mismatch or oxidative DNA base inserted by a repair DNA polymerase. However, the ligation efficiency of the LIG1 variants for DNA polymerase-promoted mutagenesis products with 3'-DNA mismatches or 8-oxo-2'-deoxyguanosine (8-oxodG) remains undefined. Here, we report that R641L and R771W fail in the ligation of nicked DNA with 3'-8-oxodG, leading to an accumulation of 5'-AMP-DNA intermediates in vitro. Moreover, we found that the presence of all possible 12 non-canonical base pairs variously impacts the ligation efficiency by P529L and R771W depending on the architecture at the DNA end, whereas E566K exhibits no activity against all substrates tested. Our results contribute to the understanding of the substrate specificity and mismatch discrimination of LIG1 for mutagenic repair intermediates and the effect of non-synonymous mutations on ligase fidelity.

Indexed as

8-Hydroxy-2'-DeoxyguanosineAdenosine MonophosphateDNA Breaks, Single-StrandedDNA DamageDNA Ligase ATPDNA Mismatch RepairDNA ReplicationGenomeHumansMutagenesisMutationOxidative Stress8-Hydroxy-2'-DeoxyguanosineAdenosine MonophosphateDNA Ligase ATPLIG1 protein, human

Identifiers

PMID32914844
PMCPMC7846189
OpenAlexW3086566913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.